Non-Coding RNA Search

Ss1.1-mE7-MI-P-E7-aia-f-11-1-UM.s1.3.5

Sequence:


               
               CACAAGACTTTTATTTCCTTCTAAAATGTATCGAAATTTAGGTTTCTTTTTCTGCCTTCC
TTGACTTGCTTTCGTTTTTAAGATTTTTTTTTTTTTTCTACGAGGATTGGATAGGAGAGA
ACAGACTGTATTCACACATTTTGGATAGCTTCATTAAACATAACTGATTCCTATGATTTC
TACCATGGCAAAATCTGATTAGGCTCAAGAGGCCTCTTAGGATGTAAAGCCGGGAAAGGT
GTAAAAAGATGCCAGACAGTATTTTTTTAAGGTCCTCTACACAATTTAATTCCTCCCTTT
AGGGATATATTTTTTGGAGTAAATCTGGCTAGAGAGCACCCAACTCCTCAATGGTCTTAC
TTTTCTTTGAATTACATCTCTGTGGTTTATGGCAGAAGAGAATTGCTTGGAGAAAGAAAA
GACAGAATCTGTCTGACCTAAGGGACTTGTTTAGAAGTTGCCACTCAGCTTGTTTGTGAG
ATATACTGCCTTTAATTACTACCCAGTGACTAATTACGCCTAATATGAGTGTCATTCTTC
CTTCAACTCTTGTCATGAGTATACACAGATCCTTGAAGTAAAAAGCTAATAAAAGTCTTT
ACCTCAATCTTCAAATTTAATGTCTGCAAATAAACCAACATATTTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAAGACTTTTATTTCCTTCTAAAATGTATCGAAATTTAGGTTTCTTTTTCTGCCTTCC
TTGACTTGCTTTCGTTTTTAAGATTTTTTTTTTTTTTCTACGAGGATTGGATAGGAGAGA
ACAGACTGTATTCACACATTTTGGATAGCTTCATTAAACATAACTGATTCCTATGATTTC
TACCATGGCAAAATCTGATTAGGCTCAAGAGGCCTCTTAGGATGTAAAGCCGGGAAAGGT
GTAAAAAGATGCCAGACAGTATTTTTTTAAGGTCCTCTACACAATTTAATTCCTCCCTTT
AGGGATATATTTTTTGGAGTAAATCTGGCTAGAGAGCACCCAACTCCTCAATGGTCTTAC
TTTTCTTTGAATTACATCTCTGTGGTTTATGGCAGAAGAGAATTGCTTGGAGAAAGAAAA
GACAGAATCTGTCTGACCTAAGGGACTTGTTTAGAAGTTGCCACTCAGCTTGTTTGTGAG
ATATACTGCCTTTAATTACTACCCAGTGACTAATTACGCCTAATATGAGTGTCATTCTTC
CTTCAACTCTTGTCATGAGTATACACAGATCCTTGAAGTAAAAAGCTAATAAAAGTCTTT
ACCTCAATCTTCAAATTTAATGTCTGCAAATAAACCAACATATTTATA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-648, gnl|bosTau2|chr18 (30325031-30324388)
               

               
               1-648, gnl|Hg17|chr16 (68302375-68301405)
               

               
               1-648, gnl|Mm7|chr8 (105988961-105988375)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-648, gnl|bosTau2|chr18 (30325031-30324388)
               

               
               1-648, gnl|Hg17|chr16 (68302375-68301405)
               

               
               1-648, gnl|Mm7|chr8 (105988961-105988375)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               bla (0.621736)
               

               
               ton (0.351)
               

               
               ski (0.29347)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.621736)
               

               
               ton (0.351)
               

               
               ski (0.29347)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

	1-648, gnl\|bosTau2\|chr18 (30325031-30324388)
	1-648, gnl\|Hg17\|chr16 (68302375-68301405)
	1-648, gnl\|Mm7\|chr8 (105988961-105988375)

	bla (0.621736)
	ton (0.351)
	ski (0.29347)
	tes (0.207814)
	aor (0.195274)
	rec (0.17307)
	cje (0.165235)
	mga (0.160205)
	bfe (0.149858)
	hyp (0.142837)
	csk (0.140746)
	ova (0.129132)
	ret (0.128733)