Non-Coding RNA Search

Ss1.1-mE7-MI-P-E7-aia-h-05-1-UM.s1.3

Sequence:


               
               TTCCAATTGCGCCTATTCTCTTTGGTGGTTTTCTTAAGCAACAGACTCTTCCACAAGACG
GTGTACCTGCAGTCTGCCCTGAGTAGCTCAACTTCTGCCGAGAAGTTCCCCTCACCACAC
CCATCTCCTGCCAAAGTGAAGGCTGCTGCAGGCCACTGAGTCGCCTGCCATCCAGAGGGG
ATGGGAGGGGTTGGAAGGACAGGATGCTGTGGCAGCTCTTTTCCTTGTTTGCCTCCCCCA
CCAGGGAAGGCAGGACCCACCCTGCCAAGGGCCCTGTGCATATTCCCTTCTCTCTGAAGA
ATCGGGACTTTTATCTCTGGTGCACGTAAGGCAGAATCCTCCTGACACCAGTATGGATTT
TAAACACCGGTGAGTCTGAAAGGACCACAGGTTTTTCTGCAGCTCTTTTCTAGCATTTGC
CAGCCCCTGTGCCTGGACTGATATGAATACTTTTTCTCCCTGTGCCATTTACCCTCCCAC
CTCCCCTTCCTGCCTCCCACCACCCTTGGATGAATGGGTTTTTGTAATTCTAGCTGTTGT
ATTTTGTGGACCTGTTATTTTTGTTTTCTTGTGAAGCACATATATTGGATGTGGGGGTAA
AGGAGAATCCATTGCTCCTGGTCACTCCCTTTATAGCCATCACTGTCTTGTTCCTTGTAA
CTCAGGTTAGATTGTGGTCTCTTGCTCCACTGCAAAAAACAAGCCTGAAGAGATGGGACA
GGAGGAAAGATCCCACAGCCAGATCTGCTGGGTTTTGAGGAGGGATTTTCTTTCTTCCCC
TTGAAGGGGAAAAAGCTTTTTTCACTGGTACATTTAAAAGTTCCCCAACTACAGGGAGGT
ACCAGTTTTGGACAAGTGCCACTGCAACACAGAATGCTCAGAGAACCTGAACTTTTAAAC
TCCAGAGGTCTTTTAAACTTTCCTTTTGGCCACTGCCGGGTCTGTCTGGTATTTCAAAGG
AATATTGGGTGCTGCAAATAGGAACTGAAGGGGTAAACTTATTAAACCCATTAAACCTGT
AAAAAAAAAAAATCTTCCTGTCATTTTAAAGACTAACTATGGGGCAAGGAGCAGATGTCA
AAATACTTGTATGGTTTTTAAGATGTCACATACATGAGCTGGTTTCCCCCAAGTGGGTAA
TAGTTGAATTTACAAATCGTCACTTCAAGAAACATATTCATTGAACACAAGACTTTTTCT
TGGATAATTTGGAAGATTAGTTCTGAAAAATGTTCCCTGAGGAGGTTTGGGTTATGTGAT
TACAATCATGTTAACATCTTGTGAGCGAATTTGGGATTGAGTTGTTTTAAAGTCTCTATG
TACATCTCTTCTGTGTGTTCATGAAGGGAGAGACCCCTTTAGACTTCAACAAATTGAACA
TCCCCTTTAGGGAAGAGATTGGACATTTGTTTAACAGAACCTTTACTTGGTACATGACAA
AATAAAGATTTAAAAATTGTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCAATTGCGCCTATTCTCTTTGGTGGTTTTCTTAAGCAACAGACTCTTCCACAAGACG
GTGTACCTGCAGTCTGCCCTGAGTAGCTCAACTTCTGCCGAGAAGTTCCCCTCACCACAC
CCATCTCCTGCCAAAGTGAAGGCTGCTGCAGGCCACTGAGTCGCCTGCCATCCAGAGGGG
ATGGGAGGGGTTGGAAGGACAGGATGCTGTGGCAGCTCTTTTCCTTGTTTGCCTCCCCCA
CCAGGGAAGGCAGGACCCACCCTGCCAAGGGCCCTGTGCATATTCCCTTCTCTCTGAAGA
ATCGGGACTTTTATCTCTGGTGCACGTAAGGCAGAATCCTCCTGACACCAGTATGGATTT
TAAACACCGGTGAGTCTGAAAGGACCACAGGTTTTTCTGCAGCTCTTTTCTAGCATTTGC
CAGCCCCTGTGCCTGGACTGATATGAATACTTTTTCTCCCTGTGCCATTTACCCTCCCAC
CTCCCCTTCCTGCCTCCCACCACCCTTGGATGAATGGGTTTTTGTAATTCTAGCTGTTGT
ATTTTGTGGACCTGTTATTTTTGTTTTCTTGTGAAGCACATATATTGGATGTGGGGGTAA
AGGAGAATCCATTGCTCCTGGTCACTCCCTTTATAGCCATCACTGTCTTGTTCCTTGTAA
CTCAGGTTAGATTGTGGTCTCTTGCTCCACTGCAAAAAACAAGCCTGAAGAGATGGGACA
GGAGGAAAGATCCCACAGCCAGATCTGCTGGGTTTTGAGGAGGGATTTTCTTTCTTCCCC
TTGAAGGGGAAAAAGCTTTTTTCACTGGTACATTTAAAAGTTCCCCAACTACAGGGAGGT
ACCAGTTTTGGACAAGTGCCACTGCAACACAGAATGCTCAGAGAACCTGAACTTTTAAAC
TCCAGAGGTCTTTTAAACTTTCCTTTTGGCCACTGCCGGGTCTGTCTGGTATTTCAAAGG
AATATTGGGTGCTGCAAATAGGAACTGAAGGGGTAAACTTATTAAACCCATTAAACCTGT
AAAAAAAAAAAATCTTCCTGTCATTTTAAAGACTAACTATGGGGCAAGGAGCAGATGTCA
AAATACTTGTATGGTTTTTAAGATGTCACATACATGAGCTGGTTTCCCCCAAGTGGGTAA
TAGTTGAATTTACAAATCGTCACTTCAAGAAACATATTCATTGAACACAAGACTTTTTCT
TGGATAATTTGGAAGATTAGTTCTGAAAAATGTTCCCTGAGGAGGTTTGGGTTATGTGAT
TACAATCATGTTAACATCTTGTGAGCGAATTTGGGATTGAGTTGTTTTAAAGTCTCTATG
TACATCTCTTCTGTGTGTTCATGAAGGGAGAGACCCCTTTAGACTTCAACAAATTGAACA
TCCCCTTTAGGGAAGAGATTGGACATTTGTTTAACAGAACCTTTACTTGGTACATGACAA
AATAAAGATTTAAAAATTGTCAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8C5G8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C5G8_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               555-667, + strand, RNAz p=0.70283

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               555-667, + strand, RNAz p=0.70283

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-890, gnl|bosTau2|chr18 (39477781-39476886)
               

               
               1-890, gnl|Hg17|chr3 (44541393-44540411)
               

               
               1-890, gnl|Mm7|chr9 (36706673-36705774)
               


               
               916-1032, gnl|bosTau2|chr18 (39476892-39476776)
               

               
               916-1032, gnl|Hg17|chr3 (44540456-44540307)
               

               
               916-1032, gnl|Mm7|chr9 (36705804-36705679)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-890, gnl|bosTau2|chr18 (39477781-39476886)
               

               
               1-890, gnl|Hg17|chr3 (44541393-44540411)
               

               
               1-890, gnl|Mm7|chr9 (36706673-36705774)
               


               
               916-1032, gnl|bosTau2|chr18 (39476892-39476776)
               

               
               916-1032, gnl|Hg17|chr3 (44540456-44540307)
               

               
               916-1032, gnl|Mm7|chr9 (36705804-36705679)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               fat (0.147427)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1-890, gnl\|bosTau2\|chr18 (39477781-39476886)
	1-890, gnl\|Hg17\|chr3 (44541393-44540411)
	1-890, gnl\|Mm7\|chr9 (36706673-36705774)

	916-1032, gnl\|bosTau2\|chr18 (39476892-39476776)
	916-1032, gnl\|Hg17\|chr3 (44540456-44540307)
	916-1032, gnl\|Mm7\|chr9 (36705804-36705679)

	mas (0.210305)
	fbs (0.175346)
	csp (0.161186)
	fat (0.147427)
	hyp (0.142837)
	nca (0.136874)
	ssp (0.13552)
	ste (0.135208)
	bla (0.124347)
	cty (0.10408)
	ldo (0.0970026)