Non-Coding RNA Search

Ss1.1-mH0-MI-P-HO-afw-d-10-1-UM.s1.3

Sequence:


               
               ATGTACTATTATTTACTGTTCACAAGACTCAACTTTGAATTCTTTTTTCCTTTTATTCTT
TCAAACAGATAATTCAAAATCTGACCATATAAAAGTCTGTCTTGCTTAATCTATATAATC
TATATATTACATTCTCAACAGTGCAAATTTTCAGAATAAATCCAGAGAAATTAGGTCTTT
ATTGATAAATTTAGGTAGAAGATTGATGTACTAGGACAATGACCTGTGTATTTAGATCCT
CTTAATCTTTCCATCTGGACAACCCACTTTCTTTTTGGATTACTGGTGACCACTATAATT
TTCTACTTAACTTCAAAGCACAGTATTGTGTTAGCCATCATGGGATAGGACCATATTGCT
AACCTACCATCAACAGAATTATTCCAGCAGAGGTGGAGTATTCCTGAGGACCCAGAGTGA
GGTGGGTGATCTGTGGCCATTTGCATGGCCAAGCAACTAGTTCTTATTGGGCTCCAAAAT
ATAGTCCTTTTAGCTCTGTGCTCTTACCAGATGATTAACCAACTATGAAAGATTTTTGTC
AACAGAGACTATTTCAGGCTACATGTAATGAGTAAATGCTTAATGCTCCCAGATGAGGCA
ATGTAGTTGCAAAAGAGCACTAAAACTATTATTTGGCACTGGTGTCCATTGCCTTAGGCT
GATATCTCACACTAAGATCACAGAGTTAAGTGACTATAAGGAACATAACAGTGATAGATG
GTTGTTTGATTCCTCGTAACCTAGAAAAGACAAGGGACTGGCTCAAATCGTATGGAGGAC
ATTTAACATATTTGAAAAGCATATGGGACATATTAAGAACACAAATTGGTAACTACATGC
GAAGGCTGACCACTTTTATGATTGAAGATTTAGGGGTGAAATAAGGACTCTGGTACCTGG
GAGGAAGGAGAATTGATTTATTGTGAGAATGCTGATATTTCTTACATTATTTTTTATTTT
CTTTAGATGCTGAGTGAACAGGAAGTAATAACAGTTCTAGTTCCCTATCAGTATAAAACT
TACCTTTCATATAATGCTACCTTTGAAGACACAGAATATATCAGACTCTACCTACTTGTT
AACAATTTAAATATGTGTTTGACCGGCTCGCAATAAAAGCTTGTGTCTAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTACTATTATTTACTGTTCACAAGACTCAACTTTGAATTCTTTTTTCCTTTTATTCTT
TCAAACAGATAATTCAAAATCTGACCATATAAAAGTCTGTCTTGCTTAATCTATATAATC
TATATATTACATTCTCAACAGTGCAAATTTTCAGAATAAATCCAGAGAAATTAGGTCTTT
ATTGATAAATTTAGGTAGAAGATTGATGTACTAGGACAATGACCTGTGTATTTAGATCCT
CTTAATCTTTCCATCTGGACAACCCACTTTCTTTTTGGATTACTGGTGACCACTATAATT
TTCTACTTAACTTCAAAGCACAGTATTGTGTTAGCCATCATGGGATAGGACCATATTGCT
AACCTACCATCAACAGAATTATTCCAGCAGAGGTGGAGTATTCCTGAGGACCCAGAGTGA
GGTGGGTGATCTGTGGCCATTTGCATGGCCAAGCAACTAGTTCTTATTGGGCTCCAAAAT
ATAGTCCTTTTAGCTCTGTGCTCTTACCAGATGATTAACCAACTATGAAAGATTTTTGTC
AACAGAGACTATTTCAGGCTACATGTAATGAGTAAATGCTTAATGCTCCCAGATGAGGCA
ATGTAGTTGCAAAAGAGCACTAAAACTATTATTTGGCACTGGTGTCCATTGCCTTAGGCT
GATATCTCACACTAAGATCACAGAGTTAAGTGACTATAAGGAACATAACAGTGATAGATG
GTTGTTTGATTCCTCGTAACCTAGAAAAGACAAGGGACTGGCTCAAATCGTATGGAGGAC
ATTTAACATATTTGAAAAGCATATGGGACATATTAAGAACACAAATTGGTAACTACATGC
GAAGGCTGACCACTTTTATGATTGAAGATTTAGGGGTGAAATAAGGACTCTGGTACCTGG
GAGGAAGGAGAATTGATTTATTGTGAGAATGCTGATATTTCTTACATTATTTTTTATTTT
CTTTAGATGCTGAGTGAACAGGAAGTAATAACAGTTCTAGTTCCCTATCAGTATAAAACT
TACCTTTCATATAATGCTACCTTTGAAGACACAGAATATATCAGACTCTACCTACTTGTT
AACAATTTAAATATGTGTTTGACCGGCTCGCAATAAAAGCTTGTGTCTAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-1127, gnl|bosTau2|chr2 (26582218-26583368)
               

               
               5-1127, gnl|Hg17|chr2 (158001827-158000637)
               

               
               5-1127, gnl|Mm7|chr2 (58047020-58045813)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1127, gnl|bosTau2|chr2 (26582218-26583368)
               

               
               5-1127, gnl|Hg17|chr2 (158001827-158000637)
               

               
               5-1127, gnl|Mm7|chr2 (58047020-58045813)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               spc (1.58712)
               

               
               cbe (0.956938)
               

               
               fco (0.471624)
               

               
               hyp (0.142837)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (1.58712)
               

               
               cbe (0.956938)
               

               
               fco (0.471624)
               

               
               hyp (0.142837)

	5-1127, gnl\|bosTau2\|chr2 (26582218-26583368)
	5-1127, gnl\|Hg17\|chr2 (158001827-158000637)
	5-1127, gnl\|Mm7\|chr2 (58047020-58045813)