Non-Coding RNA Search

Ss1.1-mH0-MI-P-HO-afz-b-02-1-UM.s1.3

Sequence:


               
               TGCTGGAGAAGATGCTAGAACTGGACGTGGACAAGCGCCTGACAGCCTCGCAGGCGCTCA
CCCACCCCTTCTTTGAACCCTTCCGGGACCCCGAGGAGGAGACAGAGGCCCAGCAGCCAC
TTGATGATTCCTTAGAGCATGAGAAACTCACAGTGGATGAATGGAAGCAGCACATCTACA
AGGAGATTGCGAACTTCAGCCCCATTGCCCGGAAGGACTCGAGGCGCCGGAGCGGCATGA
AGTTGCAGTGACCTGTTGAGCCCCACCCTCAGCTGAGCCCAGGAACCACCACATGGCACC
ACCTGCCAGCCGCTGCCCCTGGGACCCCTATTTATTTGTCACTACTAGTGTTTCCACGTG
GACTGCAGCCTTCCAAGTGGAGGAGAGAGGGCTGTTGTCCTGGTGTAGGAAACAGGCCTC
ATAGATACAGAGAGTGGTTGGTTGGGAGAAAACGGCTCTGATCATAACTGGCCTCATTAA
AGCACCCTTCTGGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGGAGAAGATGCTAGAACTGGACGTGGACAAGCGCCTGACAGCCTCGCAGGCGCTCA
CCCACCCCTTCTTTGAACCCTTCCGGGACCCCGAGGAGGAGACAGAGGCCCAGCAGCCAC
TTGATGATTCCTTAGAGCATGAGAAACTCACAGTGGATGAATGGAAGCAGCACATCTACA
AGGAGATTGCGAACTTCAGCCCCATTGCCCGGAAGGACTCGAGGCGCCGGAGCGGCATGA
AGTTGCAGTGACCTGTTGAGCCCCACCCTCAGCTGAGCCCAGGAACCACCACATGGCACC
ACCTGCCAGCCGCTGCCCCTGGGACCCCTATTTATTTGTCACTACTAGTGTTTCCACGTG
GACTGCAGCCTTCCAAGTGGAGGAGAGAGGGCTGTTGTCCTGGTGTAGGAAACAGGCCTC
ATAGATACAGAGAGTGGTTGGTTGGGAGAAAACGGCTCTGATCATAACTGGCCTCATTAA
AGCACCCTTCTGGAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, + strand, RNAz p=0.735342
               

               
               248-362, - strand, RNAz p=0.72198

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.735342
               

               
               248-362, - strand, RNAz p=0.72198

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               29-137, - strand, RNAmicro p=0.974237

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               29-137, - strand, RNAmicro p=0.974237

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC085196, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC085196, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-168, gnl|bosTau2|chr23 (8430332-8430499)
               

               
               1-168, gnl|canFam2|chr12 (8247959-8248158)
               

               
               1-168, gnl|danRer3|chr4 (3380683-3380861)
               

               
               1-168, gnl|dasNov1|scaffold_41696 (3760-3577)
               

               
               1-168, gnl|echTel1|scaffold_307286 (1228-1029)
               

               
               1-168, gnl|fr1|chrUn (103408788-103408607)
               

               
               1-168, gnl|galGal2|chr32 (877130-876946)
               

               
               1-168, gnl|hg17|chr6 (36214632-36214831)
               

               
               1-168, gnl|Hg17|chr6 (36214643-36214810)
               

               
               1-168, gnl|loxAfr1|scaffold_72268 (6324-6505)
               

               
               1-168, gnl|mm7|chr17 (26964271-26964467)
               

               
               1-168, gnl|Mm7|chr17 (26964282-26964449)
               

               
               1-168, gnl|monDom2|scaffold_42 (10603956-10603757)
               

               
               1-168, gnl|oryCun1|scaffold_82138 (2108-1927)
               

               
               1-168, gnl|panTro1|chr5 (36678638-36678837)
               

               
               1-168, gnl|rheMac2|chr4 (35894407-35894606)
               

               
               1-168, gnl|rn3|chr20 (7063507-7063703)
               

               
               1-168, gnl|tetNig1|chrUn_random (99261129-99260944)
               

               
               1-168, gnl|xenTro1|scaffold_668 (429852-430033)
               


               
               169-485, gnl|bosTau2|chr23 (8430759-8431077)
               

               
               169-485, gnl|Hg17|chr6 (36215049-36215338)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-168, gnl|bosTau2|chr23 (8430332-8430499)
               

               
               1-168, gnl|canFam2|chr12 (8247959-8248158)
               

               
               1-168, gnl|danRer3|chr4 (3380683-3380861)
               

               
               1-168, gnl|dasNov1|scaffold_41696 (3760-3577)
               

               
               1-168, gnl|echTel1|scaffold_307286 (1228-1029)
               

               
               1-168, gnl|fr1|chrUn (103408788-103408607)
               

               
               1-168, gnl|galGal2|chr32 (877130-876946)
               

               
               1-168, gnl|hg17|chr6 (36214632-36214831)
               

               
               1-168, gnl|Hg17|chr6 (36214643-36214810)
               

               
               1-168, gnl|loxAfr1|scaffold_72268 (6324-6505)
               

               
               1-168, gnl|mm7|chr17 (26964271-26964467)
               

               
               1-168, gnl|Mm7|chr17 (26964282-26964449)
               

               
               1-168, gnl|monDom2|scaffold_42 (10603956-10603757)
               

               
               1-168, gnl|oryCun1|scaffold_82138 (2108-1927)
               

               
               1-168, gnl|panTro1|chr5 (36678638-36678837)
               

               
               1-168, gnl|rheMac2|chr4 (35894407-35894606)
               

               
               1-168, gnl|rn3|chr20 (7063507-7063703)
               

               
               1-168, gnl|tetNig1|chrUn_random (99261129-99260944)
               

               
               1-168, gnl|xenTro1|scaffold_668 (429852-430033)
               


               
               169-485, gnl|bosTau2|chr23 (8430759-8431077)
               

               
               169-485, gnl|Hg17|chr6 (36215049-36215338)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               nje (0.16592)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               eje (0.0988338)

	1-119, + strand, RNAz p=0.735342
	248-362, - strand, RNAz p=0.72198

	1-168, gnl\|bosTau2\|chr23 (8430332-8430499)
	1-168, gnl\|canFam2\|chr12 (8247959-8248158)
	1-168, gnl\|danRer3\|chr4 (3380683-3380861)
	1-168, gnl\|dasNov1\|scaffold_41696 (3760-3577)
	1-168, gnl\|echTel1\|scaffold_307286 (1228-1029)
	1-168, gnl\|fr1\|chrUn (103408788-103408607)
	1-168, gnl\|galGal2\|chr32 (877130-876946)
	1-168, gnl\|hg17\|chr6 (36214632-36214831)
	1-168, gnl\|Hg17\|chr6 (36214643-36214810)
	1-168, gnl\|loxAfr1\|scaffold_72268 (6324-6505)
	1-168, gnl\|mm7\|chr17 (26964271-26964467)
	1-168, gnl\|Mm7\|chr17 (26964282-26964449)
	1-168, gnl\|monDom2\|scaffold_42 (10603956-10603757)
	1-168, gnl\|oryCun1\|scaffold_82138 (2108-1927)
	1-168, gnl\|panTro1\|chr5 (36678638-36678837)
	1-168, gnl\|rheMac2\|chr4 (35894407-35894606)
	1-168, gnl\|rn3\|chr20 (7063507-7063703)
	1-168, gnl\|tetNig1\|chrUn_random (99261129-99260944)
	1-168, gnl\|xenTro1\|scaffold_668 (429852-430033)

	169-485, gnl\|bosTau2\|chr23 (8430759-8431077)
	169-485, gnl\|Hg17\|chr6 (36215049-36215338)