Non-Coding RNA Search

Ss1.1-mH0-MI-P-HO-afz-d-10-1-UM.s1.3

Sequence:


               
               TGGTTTTTAGTGATATTTTTATTTTGTTTAGTTTTTAGCTGTGTGTATTTAAGTGCTGTT
AAAGTACTTTTTTGGCTTTTTTTTTTAAACTTTAAAAAATCATCATCAGCTATTTCTTGA
CTAATAGGTTGTAGTTTACATGTTTTGTCAAGACATTGTTCCGCTCCATAATACCAAAAC
AAGGTGAAAGAAGCAAAACAAAACAGTGTGGAGGAAGAGAAAGTTTAATTATCTGGCTCC
GTGGAGAAAAGCAACTGCCTAATGGAATCCTTCACTAGGATTGTTTTGTCCCTTTTATTA
AAGGAATCATTAAGTGTGCCCACCAAATTGAAGCTGATTTTGTAGCACTTAAGCGATAGC
TAAAAGGTATGATTTGCCTTATTGAATTGATATTGGTATATCTGACCTTAAGCAGTAGGT
TGAAACTGCATACCTTTTTATAATCAAGAAATTTGGTGAATGTAGAGGATGTGACAGTGG
AACAGAGAATACTTGGGAATGAAGGTAAAAATTTAGCTGCTGTTATTTGCTTGTTTATTC
TCCTCTTGTTTAGTTCACAAAGAAACCGTGGCCTTAGAATTTTCTTTTTGATGCAAAAAT
TTTGAAATTGAGAATGTGCATCTTTTGGCACACAAAATCCTTCCATGGGCAGAACTTTCA
TGTTTTTGTTTTGCACAATAAGAAACTCAATAGGCAGGGGTTATGTTTTTGATAAGTTAA
CTATGAAAGCTTTTTATTTTTATTATAAAATGTAACAATTTAACCCACAGGAAAAAAAAA
TAAAGATTGTATTTTGTACTCTTGTCTGAACCCCATGGGTTCTTTTTGTTAATAAAATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTTTTTAGTGATATTTTTATTTTGTTTAGTTTTTAGCTGTGTGTATTTAAGTGCTGTT
AAAGTACTTTTTTGGCTTTTTTTTTTAAACTTTAAAAAATCATCATCAGCTATTTCTTGA
CTAATAGGTTGTAGTTTACATGTTTTGTCAAGACATTGTTCCGCTCCATAATACCAAAAC
AAGGTGAAAGAAGCAAAACAAAACAGTGTGGAGGAAGAGAAAGTTTAATTATCTGGCTCC
GTGGAGAAAAGCAACTGCCTAATGGAATCCTTCACTAGGATTGTTTTGTCCCTTTTATTA
AAGGAATCATTAAGTGTGCCCACCAAATTGAAGCTGATTTTGTAGCACTTAAGCGATAGC
TAAAAGGTATGATTTGCCTTATTGAATTGATATTGGTATATCTGACCTTAAGCAGTAGGT
TGAAACTGCATACCTTTTTATAATCAAGAAATTTGGTGAATGTAGAGGATGTGACAGTGG
AACAGAGAATACTTGGGAATGAAGGTAAAAATTTAGCTGCTGTTATTTGCTTGTTTATTC
TCCTCTTGTTTAGTTCACAAAGAAACCGTGGCCTTAGAATTTTCTTTTTGATGCAAAAAT
TTTGAAATTGAGAATGTGCATCTTTTGGCACACAAAATCCTTCCATGGGCAGAACTTTCA
TGTTTTTGTTTTGCACAATAAGAAACTCAATAGGCAGGGGTTATGTTTTTGATAAGTTAA
CTATGAAAGCTTTTTATTTTTATTATAAAATGTAACAATTTAACCCACAGGAAAAAAAAA
TAAAGATTGTATTTTGTACTCTTGTCTGAACCCCATGGGTTCTTTTTGTTAATAAAATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               578-691, + strand, RNAz p=0.570697

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               578-691, + strand, RNAz p=0.570697

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_183376, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_183376, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               228-691, gnl|bosTau2|chr25 (19845507-19845070)
               

               
               228-691, gnl|Hg17|chr15 (96317461-96317912)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               228-691, gnl|bosTau2|chr25 (19845507-19845070)
               

               
               228-691, gnl|Hg17|chr15 (96317461-96317912)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               lnt (0.284616)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.284616)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	228-691, gnl\|bosTau2\|chr25 (19845507-19845070)
	228-691, gnl\|Hg17\|chr15 (96317461-96317912)