Non-Coding RNA Search

Ss1.1-mH1-MI-P-H1-afn-a-12-1-UM.s1.3

Sequence:


               
               AAGAGAATCTTCCTCTCTGGAAGTGAGTGGAAAAGCAAAGGGAAGGCCCTCTTACTTTTG
ACCACTGGCTTCATGGAAACACTTTGTAGCTGGGGGTGGTTTGCATCTTTAATTCTTTGA
TGATGGCGTTTAGGTACCGCACTTTATTACTTACTACCTGAGATGTTATAAAGTCTGTTT
TATTTGGGGTCGGGTATAAATTTTTCTAGGAAATCACCTCTCATCTGCCGAAAATATTCT
ATGTAGAAGTGGACTTTTGAGATTCCGAAGGCATTTTGGGGTCCACTCATCCCTCTCTCA
TGGGGGTTCTCTGCATTCGAAGGCTACGTCTGAGTGGATGAGGGATGGACTGGTGGGCAG
TCACATTCTTTCAAGCCAGCTGTTGTTTCCTACAAGTACTGTATGAAGACAGACAAAAAC
TTGTAAATACTGTTGCCTCTACTGCTGACTGACAGATGTATTGCGAGGACTCATTGATGC
TGTTCATTGTTTTTATAGCCGTTTGAGCCACTCTAAGAATCTAAAATGGACCCTTTAGTT
CACCTCAGGTGCATCTTTATAAAGCAGGGGTGTTAAATATCCTAGACCTGCTGTTTTATC
TCCTGCTGCAGACTGGCAGACTAGATGAAGTCTGACTTAGTTATTTGTTAGTTGTCATGT
TAAGGATAAAGTTAAGGGCAAAGTTATAAAAGCCGACAGTCCTGAAATTACACAGCTCAG
GCTGCTTATTATGAAGAAAATCCTTTAGTGGGACCTCGATGGGGAAACGGTTTGTGTCAG
CCACCTGCCACATCCCCTTGGTTGAAGGTAGTATTGTGTGTCCTCTTGAAAAGCATAAGG
TGCCTGTAGTCCCGAGTGCTGTGACCCAGGCTCAGGGCCCGACCCTGCTGGTGGAGCAGT
AGGTCTGGCTACTGGGAGACACTTACCCTGAAAGAAAAATCTGTGTCCGTGGGGCCAGGA
ACAGCTGTTGCAGAGCTGGGGTCAGAACATGCATGCAAGATGTACCCTGAAGATGGGCAG
GTGTAGGCTGATGTCTGCTCACCACTGTGCTGTAGGTATTTTTTTTTTGTCACTGGTCAG
TTTGTTGTCGTTGCGGTTCTCTTTGTGAGAGTCCTTTACCTTCCTCTCTCAGGTTCCTGC
AGGCCCTGGTGGATAGAGTGGCGTAGGCAGGCCAGCTGTGTTTTGCTTTTTCTGTTGCTT
GTAAATGTACCATGGTAACCAAAGCCCAGGCATTTAACATCCACACAAGCCATCCCTTCG
GCAGCAGTGGTCTTCCTCCCTTTGTGGTGGGTGACTTACCCCAAGAGAGAAGGTTGGGTA
AGGTGAGCGCCTTTCTTTGCCCATGTGCTCATAGGCTGATGCTGACCACGCCACTGAGCA
GTTCAGGCACGTGAAGTGCTTTATTTTCTTTACCACAGAAACTCTGAGTTTGAAGTACAG
GTTACTGGGAATCAAGGGCCACATTCAGTATATATTATAAAGGGGATGCTTTCATCAAAT
TGCTCTTCAAGTTTAGAGTTACTCTTCATGTTAATGGAGTAAGTACTATTTAAGAATAAA
CCAAAGCACAAGCAAGAGTGAGTCCCTGTAACCAAAGATGAGCAGCATCACCCTGGGTCA
CTAGATAAACCACTGTTTGTACACAGAAGAGTTTCCTTCTTGGTGGTGAGGGGCAGGTAC
CTGGGAAAGAGCTTTATATCCTGTCTGTCCACCTGTGCTAATATCGCAGATGTATATTAC
ACAGAGTAGTGAGCCTGATTTAAATTCCTTACTTAGTCGTATATTATTTGCACCACTTAG
GTTGTATCATGTACAATCTCTTGACCAAGCCTGTTTTTAAACTCTGGTAGAGTATCATTT
TATACATATTCCCAGCTGCAGAACTGGTATTGCTTAATCTCAGCAAGAGATTGTTTGCAT
GGAAAGATTAATAGCACAGATTCGCTTTCTAATATTTTGCACTTTTTGAAATGTTTGTTT
TTTATGCGATTATTTAAAACTTTAGCAAATACTGAAATAAAACCATACTGACCTATAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGAATCTTCCTCTCTGGAAGTGAGTGGAAAAGCAAAGGGAAGGCCCTCTTACTTTTG
ACCACTGGCTTCATGGAAACACTTTGTAGCTGGGGGTGGTTTGCATCTTTAATTCTTTGA
TGATGGCGTTTAGGTACCGCACTTTATTACTTACTACCTGAGATGTTATAAAGTCTGTTT
TATTTGGGGTCGGGTATAAATTTTTCTAGGAAATCACCTCTCATCTGCCGAAAATATTCT
ATGTAGAAGTGGACTTTTGAGATTCCGAAGGCATTTTGGGGTCCACTCATCCCTCTCTCA
TGGGGGTTCTCTGCATTCGAAGGCTACGTCTGAGTGGATGAGGGATGGACTGGTGGGCAG
TCACATTCTTTCAAGCCAGCTGTTGTTTCCTACAAGTACTGTATGAAGACAGACAAAAAC
TTGTAAATACTGTTGCCTCTACTGCTGACTGACAGATGTATTGCGAGGACTCATTGATGC
TGTTCATTGTTTTTATAGCCGTTTGAGCCACTCTAAGAATCTAAAATGGACCCTTTAGTT
CACCTCAGGTGCATCTTTATAAAGCAGGGGTGTTAAATATCCTAGACCTGCTGTTTTATC
TCCTGCTGCAGACTGGCAGACTAGATGAAGTCTGACTTAGTTATTTGTTAGTTGTCATGT
TAAGGATAAAGTTAAGGGCAAAGTTATAAAAGCCGACAGTCCTGAAATTACACAGCTCAG
GCTGCTTATTATGAAGAAAATCCTTTAGTGGGACCTCGATGGGGAAACGGTTTGTGTCAG
CCACCTGCCACATCCCCTTGGTTGAAGGTAGTATTGTGTGTCCTCTTGAAAAGCATAAGG
TGCCTGTAGTCCCGAGTGCTGTGACCCAGGCTCAGGGCCCGACCCTGCTGGTGGAGCAGT
AGGTCTGGCTACTGGGAGACACTTACCCTGAAAGAAAAATCTGTGTCCGTGGGGCCAGGA
ACAGCTGTTGCAGAGCTGGGGTCAGAACATGCATGCAAGATGTACCCTGAAGATGGGCAG
GTGTAGGCTGATGTCTGCTCACCACTGTGCTGTAGGTATTTTTTTTTTGTCACTGGTCAG
TTTGTTGTCGTTGCGGTTCTCTTTGTGAGAGTCCTTTACCTTCCTCTCTCAGGTTCCTGC
AGGCCCTGGTGGATAGAGTGGCGTAGGCAGGCCAGCTGTGTTTTGCTTTTTCTGTTGCTT
GTAAATGTACCATGGTAACCAAAGCCCAGGCATTTAACATCCACACAAGCCATCCCTTCG
GCAGCAGTGGTCTTCCTCCCTTTGTGGTGGGTGACTTACCCCAAGAGAGAAGGTTGGGTA
AGGTGAGCGCCTTTCTTTGCCCATGTGCTCATAGGCTGATGCTGACCACGCCACTGAGCA
GTTCAGGCACGTGAAGTGCTTTATTTTCTTTACCACAGAAACTCTGAGTTTGAAGTACAG
GTTACTGGGAATCAAGGGCCACATTCAGTATATATTATAAAGGGGATGCTTTCATCAAAT
TGCTCTTCAAGTTTAGAGTTACTCTTCATGTTAATGGAGTAAGTACTATTTAAGAATAAA
CCAAAGCACAAGCAAGAGTGAGTCCCTGTAACCAAAGATGAGCAGCATCACCCTGGGTCA
CTAGATAAACCACTGTTTGTACACAGAAGAGTTTCCTTCTTGGTGGTGAGGGGCAGGTAC
CTGGGAAAGAGCTTTATATCCTGTCTGTCCACCTGTGCTAATATCGCAGATGTATATTAC
ACAGAGTAGTGAGCCTGATTTAAATTCCTTACTTAGTCGTATATTATTTGCACCACTTAG
GTTGTATCATGTACAATCTCTTGACCAAGCCTGTTTTTAAACTCTGGTAGAGTATCATTT
TATACATATTCCCAGCTGCAGAACTGGTATTGCTTAATCTCAGCAAGAGATTGTTTGCAT
GGAAAGATTAATAGCACAGATTCGCTTTCTAATATTTTGCACTTTTTGAAATGTTTGTTT
TTTATGCGATTATTTAAAACTTTAGCAAATACTGAAATAAAACCATACTGACCTATAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-1002, gnl|bosTau2|chr27 (21293630-21294646)
               

               
               1-1002, gnl|Hg17|chr8 (38237394-38238584)
               

               
               1-1002, gnl|Mm7|chr8 (24483740-24482641)
               


               
               1786-2049, gnl|bosTau2|chr12 (29319934-29319667)
               

               
               1786-2049, gnl|Hg17|chr8 (38239201-38239455)
               

               
               1786-2049, gnl|Mm7|chr8 (24482087-24481835)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1002, gnl|bosTau2|chr27 (21293630-21294646)
               

               
               1-1002, gnl|Hg17|chr8 (38237394-38238584)
               

               
               1-1002, gnl|Mm7|chr8 (24483740-24482641)
               


               
               1786-2049, gnl|bosTau2|chr12 (29319934-29319667)
               

               
               1786-2049, gnl|Hg17|chr8 (38239201-38239455)
               

               
               1786-2049, gnl|Mm7|chr8 (24482087-24481835)

Expressed library(ies): 29 entry(ies)

More info

Expressed library(ies): 29 entry(ies)

Help | Less info


               
               rec (0.519211)
               

               
               cbe (0.478469)
               

               
               fco (0.471624)
               

               
               kid (0.389206)
               

               
               duo (0.345602)
               

               
               spc (0.340097)
               

               
               csk (0.281492)
               

               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

Expressed library(ies): 29 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               cbe (0.478469)
               

               
               fco (0.471624)
               

               
               kid (0.389206)
               

               
               duo (0.345602)
               

               
               spc (0.340097)
               

               
               csk (0.281492)
               

               
               clu (0.239292)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               jej (0.0989218)

	1-1002, gnl\|bosTau2\|chr27 (21293630-21294646)
	1-1002, gnl\|Hg17\|chr8 (38237394-38238584)
	1-1002, gnl\|Mm7\|chr8 (24483740-24482641)

	1786-2049, gnl\|bosTau2\|chr12 (29319934-29319667)
	1786-2049, gnl\|Hg17\|chr8 (38239201-38239455)
	1786-2049, gnl\|Mm7\|chr8 (24482087-24481835)

	rec (0.519211)
	cbe (0.478469)
	fco (0.471624)
	kid (0.389206)
	duo (0.345602)
	spc (0.340097)
	csk (0.281492)
	clu (0.239292)
	mgp (0.230681)
	aor (0.195274)
	cmu (0.186393)
	sag (0.182715)
	fty (0.17584)
	ill (0.175593)
	sin (0.174948)
	eye (0.170503)
	cki (0.165235)
	tbr (0.154178)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	hlv (0.139256)
	ret (0.128733)
	sug (0.127291)
	bla (0.124347)
	eru (0.120048)
	med (0.116252)
	jej (0.0989218)