Non-Coding RNA Search

Ss1.1-mH3-MI-P-H3-aat-d-12-1-UM.s1.3

Sequence:


               
               GCAAAGCAGGTGGGCAAAAAGATTTCCATGCTAATCTGAAAAGGTTCATGCTCAATATTG
TGTAAAGCTTTCAAAGGTTGTTTTTCAAAGACAATCATTTTTGTTTCTATTTTTCTTATT
GCAAACTCTACTGGAAAAGCAGCATGTCAAAAATATTTTATGTTCTCTACACAACTCTGC
TTTTTTTCTCTTCTTTGTCCCTTTCTTCTTCTAATTCTTTTTTTTTTTTGATTAAAAGAT
TCATTATTTATGTTATGGTTTGCTGACAATGTGAAACTCACAGAAAATGTTCTCTTTTTA
AATATACAGCTGCAAACTGTTCAAAGGAACCATAAAAAAAAACCCTAGGTGTTATTTATT
AACATATTATAAAATAATGTTTGATGCAGTATGTGCTTGTCTTATGTAAAACTGGAATGT
GAGACACGTTGCTGTGACTTTTTTTTCTCATTCACATTTGTAGATATTGTGTGAACTACA
GTATATAATGATAATAATTAAAAGGCTATGTGAATGTCACGTACATTTTGAAATGATAGA
ACTATATTAGCTTTGTATCATGTTTGGATAATTCATCAATGTTCACAGTTTAAAACATCA
TTAAACATTATATAATTAGCAATGAGAAAGAATCTTACCTAACTTAAATTTGGGATGTTC
CCTGTCTCTTCTCCAGATACATTATAATTCTGGACCTCTATTTATCTCAAAACTCTTAAC
ATGTGCAGACCAACAGGTTTTTGCATTCCTTTTAAATATCTTGGTTGTGACAGAGCTTGT
TGTTGATCAGATTCACTGTTTCATTCATATTTATTGTAATATATTTTTTGTTTTGTAAAT
ATGTTACACTCAAAATGTGATCGGTCTAAAATATTTGTAATGTATATTAAAAGGCTGGAA
AATAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAAGCAGGTGGGCAAAAAGATTTCCATGCTAATCTGAAAAGGTTCATGCTCAATATTG
TGTAAAGCTTTCAAAGGTTGTTTTTCAAAGACAATCATTTTTGTTTCTATTTTTCTTATT
GCAAACTCTACTGGAAAAGCAGCATGTCAAAAATATTTTATGTTCTCTACACAACTCTGC
TTTTTTTCTCTTCTTTGTCCCTTTCTTCTTCTAATTCTTTTTTTTTTTTGATTAAAAGAT
TCATTATTTATGTTATGGTTTGCTGACAATGTGAAACTCACAGAAAATGTTCTCTTTTTA
AATATACAGCTGCAAACTGTTCAAAGGAACCATAAAAAAAAACCCTAGGTGTTATTTATT
AACATATTATAAAATAATGTTTGATGCAGTATGTGCTTGTCTTATGTAAAACTGGAATGT
GAGACACGTTGCTGTGACTTTTTTTTCTCATTCACATTTGTAGATATTGTGTGAACTACA
GTATATAATGATAATAATTAAAAGGCTATGTGAATGTCACGTACATTTTGAAATGATAGA
ACTATATTAGCTTTGTATCATGTTTGGATAATTCATCAATGTTCACAGTTTAAAACATCA
TTAAACATTATATAATTAGCAATGAGAAAGAATCTTACCTAACTTAAATTTGGGATGTTC
CCTGTCTCTTCTCCAGATACATTATAATTCTGGACCTCTATTTATCTCAAAACTCTTAAC
ATGTGCAGACCAACAGGTTTTTGCATTCCTTTTAAATATCTTGGTTGTGACAGAGCTTGT
TGTTGATCAGATTCACTGTTTCATTCATATTTATTGTAATATATTTTTTGTTTTGTAAAT
ATGTTACACTCAAAATGTGATCGGTCTAAAATATTTGTAATGTATATTAAAAGGCTGGAA
AATAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-904, gnl|bosTau2|chr3 (53547486-53548395)
               

               
               2-904, gnl|Hg17|chr1 (65592103-65592980)
               

               
               2-904, gnl|Mm7|chr4 (101018340-101019238)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-904, gnl|bosTau2|chr3 (53547486-53548395)
               

               
               2-904, gnl|Hg17|chr1 (65592103-65592980)
               

               
               2-904, gnl|Mm7|chr4 (101018340-101019238)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fco (1.25766)
               

               
               fhi (0.339155)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.25766)
               

               
               fhi (0.339155)
               

               
               spc (0.226732)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               bfe (0.149858)
               

               
               hyp (0.142837)
               

               
               ecc (0.115035)

	2-904, gnl\|bosTau2\|chr3 (53547486-53548395)
	2-904, gnl\|Hg17\|chr1 (65592103-65592980)
	2-904, gnl\|Mm7\|chr4 (101018340-101019238)

	fco (1.25766)
	fhi (0.339155)
	spc (0.226732)
	fcc (0.197785)
	fbs (0.175346)
	bfe (0.149858)
	hyp (0.142837)
	ecc (0.115035)