Non-Coding RNA Search

Ss1.1-mH3-MI-P-H3-adk-b-05-1-UM.s1.3

Sequence:


               
               AACTATGAGGAATGATGCCAGATGTTGATAAACTTAGTTATTCTTAATCGGGACAGAGCC
AACCTAACAGATTTTTCTGATGAGCATGTTTTATGAATCCTCCATTGTGCTCCATTCTAT
CACATGTGCATTTTTCCTGTTAAACTGCAATGACTTCAACTCTTCCCCTGTCCTTCTAAA
TTGATTTTCCAAAGTTGGAGTGTAGTCTTTCCCCCCTTAGGCTATGCATTAATTGAGGCT
TTCTTTTCACCATACTTTATAATGTCTAGTATACGCTATTTCTACTGCCCACATCTTGGC
TCTGCACAGTCACCTTGCCCTTCCTCCCACCACCTAAGAAAAGAGGGTCAGACTAACAGG
TGAAGTGTACAAGGTGTCTGTGTGTTTGTGTAGCTTCAGAGTTAGATTGAAATTGCCAGG
CACAGATTTAGTCTTTTGTCATTTTGTTTACACATTGGGGAAAAAGAATTCAGTTTATTA
AACGTTTCATGTAACTGCACCCAAGTTTTGCCAAGCTGGGAACTTGGACCTTTTCTGTGT
AGTGACTTTTTAATTCTAGTTTTCATAACCTGGAGATCAGACTGTTGCTTTCGCATGATG
TACGTAGTGTCTCATGACTGGAGTTTGCTTTGTTTTATAGTATCTGTACTCCTTGTATTT
TTCAAGAGCTATTTTGTAAACAGATGATGTATTTCTCCATTGAAAACACAATAAAAAAAA
AACAGCACAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTATGAGGAATGATGCCAGATGTTGATAAACTTAGTTATTCTTAATCGGGACAGAGCC
AACCTAACAGATTTTTCTGATGAGCATGTTTTATGAATCCTCCATTGTGCTCCATTCTAT
CACATGTGCATTTTTCCTGTTAAACTGCAATGACTTCAACTCTTCCCCTGTCCTTCTAAA
TTGATTTTCCAAAGTTGGAGTGTAGTCTTTCCCCCCTTAGGCTATGCATTAATTGAGGCT
TTCTTTTCACCATACTTTATAATGTCTAGTATACGCTATTTCTACTGCCCACATCTTGGC
TCTGCACAGTCACCTTGCCCTTCCTCCCACCACCTAAGAAAAGAGGGTCAGACTAACAGG
TGAAGTGTACAAGGTGTCTGTGTGTTTGTGTAGCTTCAGAGTTAGATTGAAATTGCCAGG
CACAGATTTAGTCTTTTGTCATTTTGTTTACACATTGGGGAAAAAGAATTCAGTTTATTA
AACGTTTCATGTAACTGCACCCAAGTTTTGCCAAGCTGGGAACTTGGACCTTTTCTGTGT
AGTGACTTTTTAATTCTAGTTTTCATAACCTGGAGATCAGACTGTTGCTTTCGCATGATG
TACGTAGTGTCTCATGACTGGAGTTTGCTTTGTTTTATAGTATCTGTACTCCTTGTATTT
TTCAAGAGCTATTTTGTAAACAGATGATGTATTTCTCCATTGAAAACACAATAAAAAAAA
AACAGCACAATC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               357-722, gnl|bosTau2|chr25 (37415704-37416043)
               

               
               357-722, gnl|Hg17|chr7 (4670951-4670625)
               

               
               357-722, gnl|Mm7|chr5 (141503888-141503562)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               357-722, gnl|bosTau2|chr25 (37415704-37416043)
               

               
               357-722, gnl|Hg17|chr7 (4670951-4670625)
               

               
               357-722, gnl|Mm7|chr5 (141503888-141503562)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

	357-722, gnl\|bosTau2\|chr25 (37415704-37416043)
	357-722, gnl\|Hg17\|chr7 (4670951-4670625)
	357-722, gnl\|Mm7\|chr5 (141503888-141503562)

	sag (0.182715)
	gul (0.177588)
	ste (0.135208)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)