Ss1.1-mH3-MI-P-H3-adl-e-04-1-UM.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCGGGAGCACCCTGCTGTGCCTGCTGCTGGCGGCGGCGGTCCCCACGGCCCCCGCCCC GGCTCCGACGGTGACCTCGGCTCCAGTTGAGTCGGGTCGGGCTCTCAACTACCCGCAAGA GGAGGCCACCCTCAACGAGATGTTCCGCGAGGTTGAGGAACTGATGGAAGACACGCAGCA CAAACTGCGCAGCGCGGTGGAGGAGATGGAGGCAGAAGAGGCTGCGGCTAAAATATCATC AGAAGTGAACCTCGCGCACTTACCGCCCACCTATCACAATGAGACCAACACGGAAACCAA GATTGGAAATAATACCATCCAAGTCCACCGGGAAATTCACAAGATCACCAACAACCAGAC TGGACAGATGGTTTTTTCTGAGACGGTCATTACGTCGATGGGAGATGACGAAAGCAAAAG GAGCCACGAGTGCATCATTGATGAGGACTGCGGGGCTGGCAGGTACTGCCAGTTTTCCAG CTTCGAGTACTCCTGCCAGCCGTGCCGGGACCAGCAGACACTCTGCACCCGGGACAGTGA GTGCTGCGGAGACCAGCTGTGCGTCTGGGGTCACTGCTCCAAAGCAGCCACCAAAGGCGG CAATGGGACCATCTGTGACAACCAGAGGGACTGCCAGCCGGGGCTGTGCTGTGCCTTCCA GAGAGGTCTGCTGTTTCCTGTGTGCACACCCCTGCCCGTGGAGGGCGAGCTCTGCCACGA CCCTGCCAGCCGGCTTCTGGACCTCATCACCTGGGAGCTGGAGCCTGATGGAGCTTTGGA CCGATGCCCGTGTGCCAGTGGCCTCCTCTGCCAGCCCCACAGCCACAGCCTGGTGTACGT GTGCCAGCCCACCTTTGTCGGGAGCCGTGATGAGGACGGAGAGAGCCTGGTACCCAGGGA GGTCCCCGAGGAGTACGAGGATGGCGGCTTCATGGAGGAGGTGCGCCGGGAGCTGGAGAA CCTGGAGAGGAGCCTGTCGGTGGAGATGGCTCTCAGCGAGCTCGCGGCCACCTCGGAGCT GCTGGAAGGAGAGGAGATTTAGACCCAGGCCTGTTCCGTGGGTAGACGTGCAATAGAAGT AGCTAATTTATTTCCCCAGCTGTTTCCCTAGGTGTGGGCTCTCCAGGCTTTTTTCCACGG CCTCTCCCCAGTACACTTTCCCTCTGGCTTGAAACAACACGAGGGGCTGCACCCTCATCC GGTGCCAACCCCCTCCCCAGACTGTACACCGTGCATCGCAGTTCTGGTGCCTGGGGAAGA TGGGGTGTGGGAGGCTGAAGGCGGAACAGGGCTGCTAAACTGGTCCAAATGATTGGCTGC TTCGCCTCTGCTGCTTGGCAGATGGCACATTTTCATTTTGTTATGACAGCACCTTGAGAG TTGCTGGCAGGGAGGGGGCAGAAGGATGCAAAATTTCCCCACAGTGGGTTTTGGGGAAAG GTTGACTCTCAAACATGTGGAGAAGAAGGCCCTGCTTTGCAAACCTAAACCTGCAAAAAC ACAACCAAGTCAATCTTTCATGCCGTTTTTCCCATTAGCACGGGTACGCGCTGCCCTCAG CTGCAGCAGGTGAAACGTTCTGCTCACTCTGTGTTGCCTGCATCCGTCCTCTCAGCCGTG TTCCTCAGCTCCTACCTCTGTGCCAGGGCAGCAGTTTCATGTCCTCTCACCATAGCCTTG GTCTCCCCATCTGTCAGGATCTCGGAGGCTCAGAGATGTCAAGTTGCTTGCCCGTGTCAC ACAGCTAGTGAAGACCAGAGCAGGATTTCACTCAGGTGTGGTTCCAAGTCCAGTGCTCTC CCCACTGCTCCCCACTGGCCTTGGTGCCACCAAAAGTACCCCCTACAAAGAGGAAGGATG AGATTTTTCTTTTTTGGGGGGAGGCACATCTGGAACTAAGGTCAAACTAGTTCACACATC CCTATAAGAGTCAACTTCTACTGTTAAAAATGCACATTCTCCCCAGTGTAGGGGTGGTCC CCATTCTAGTGGAGATGGAAGGTACTGACAGTGTCCTCTGTGGCCGGATGTTACATCAGT ACCTTTGAAGGGACACATAACTGGAGCATAATATGTAAGTTAACTTGCCAGAAACAGTAC TTAGGTAATTGTAGGGCCAGGACTATAAATGAGGCTTGCAAAATCATTTACCAGCAACTG AAGACCATTACCAACCACACAGAGAAAATCAAACCAAGCAGAAGGCTCTATGAAATAATG GTTGTAATAGCCAAGCTGAGAGCACTGAATTGTATGCTGTTCCATAAATGATATTTTCAG GTGTCATGGACTGTTTCCATCATGTATTCATCCAGAGTTATTAAATGTTAAACTCACACA CAATTGTATAAGCATGCTTTCTTTGTGTTCTAAATTATGTATAAACACATATGTTGCATT TAGAAGTCAAGCATAAATCACTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCGGGAGCACCCTGCTGTGCCTGCTGCTGGCGGCGGCGGTCCCCACGGCCCCCGCCCC GGCTCCGACGGTGACCTCGGCTCCAGTTGAGTCGGGTCGGGCTCTCAACTACCCGCAAGA GGAGGCCACCCTCAACGAGATGTTCCGCGAGGTTGAGGAACTGATGGAAGACACGCAGCA CAAACTGCGCAGCGCGGTGGAGGAGATGGAGGCAGAAGAGGCTGCGGCTAAAATATCATC AGAAGTGAACCTCGCGCACTTACCGCCCACCTATCACAATGAGACCAACACGGAAACCAA GATTGGAAATAATACCATCCAAGTCCACCGGGAAATTCACAAGATCACCAACAACCAGAC TGGACAGATGGTTTTTTCTGAGACGGTCATTACGTCGATGGGAGATGACGAAAGCAAAAG GAGCCACGAGTGCATCATTGATGAGGACTGCGGGGCTGGCAGGTACTGCCAGTTTTCCAG CTTCGAGTACTCCTGCCAGCCGTGCCGGGACCAGCAGACACTCTGCACCCGGGACAGTGA GTGCTGCGGAGACCAGCTGTGCGTCTGGGGTCACTGCTCCAAAGCAGCCACCAAAGGCGG CAATGGGACCATCTGTGACAACCAGAGGGACTGCCAGCCGGGGCTGTGCTGTGCCTTCCA GAGAGGTCTGCTGTTTCCTGTGTGCACACCCCTGCCCGTGGAGGGCGAGCTCTGCCACGA CCCTGCCAGCCGGCTTCTGGACCTCATCACCTGGGAGCTGGAGCCTGATGGAGCTTTGGA CCGATGCCCGTGTGCCAGTGGCCTCCTCTGCCAGCCCCACAGCCACAGCCTGGTGTACGT GTGCCAGCCCACCTTTGTCGGGAGCCGTGATGAGGACGGAGAGAGCCTGGTACCCAGGGA GGTCCCCGAGGAGTACGAGGATGGCGGCTTCATGGAGGAGGTGCGCCGGGAGCTGGAGAA CCTGGAGAGGAGCCTGTCGGTGGAGATGGCTCTCAGCGAGCTCGCGGCCACCTCGGAGCT GCTGGAAGGAGAGGAGATTTAGACCCAGGCCTGTTCCGTGGGTAGACGTGCAATAGAAGT AGCTAATTTATTTCCCCAGCTGTTTCCCTAGGTGTGGGCTCTCCAGGCTTTTTTCCACGG CCTCTCCCCAGTACACTTTCCCTCTGGCTTGAAACAACACGAGGGGCTGCACCCTCATCC GGTGCCAACCCCCTCCCCAGACTGTACACCGTGCATCGCAGTTCTGGTGCCTGGGGAAGA TGGGGTGTGGGAGGCTGAAGGCGGAACAGGGCTGCTAAACTGGTCCAAATGATTGGCTGC TTCGCCTCTGCTGCTTGGCAGATGGCACATTTTCATTTTGTTATGACAGCACCTTGAGAG TTGCTGGCAGGGAGGGGGCAGAAGGATGCAAAATTTCCCCACAGTGGGTTTTGGGGAAAG GTTGACTCTCAAACATGTGGAGAAGAAGGCCCTGCTTTGCAAACCTAAACCTGCAAAAAC ACAACCAAGTCAATCTTTCATGCCGTTTTTCCCATTAGCACGGGTACGCGCTGCCCTCAG CTGCAGCAGGTGAAACGTTCTGCTCACTCTGTGTTGCCTGCATCCGTCCTCTCAGCCGTG TTCCTCAGCTCCTACCTCTGTGCCAGGGCAGCAGTTTCATGTCCTCTCACCATAGCCTTG GTCTCCCCATCTGTCAGGATCTCGGAGGCTCAGAGATGTCAAGTTGCTTGCCCGTGTCAC ACAGCTAGTGAAGACCAGAGCAGGATTTCACTCAGGTGTGGTTCCAAGTCCAGTGCTCTC CCCACTGCTCCCCACTGGCCTTGGTGCCACCAAAAGTACCCCCTACAAAGAGGAAGGATG AGATTTTTCTTTTTTGGGGGGAGGCACATCTGGAACTAAGGTCAAACTAGTTCACACATC CCTATAAGAGTCAACTTCTACTGTTAAAAATGCACATTCTCCCCAGTGTAGGGGTGGTCC CCATTCTAGTGGAGATGGAAGGTACTGACAGTGTCCTCTGTGGCCGGATGTTACATCAGT ACCTTTGAAGGGACACATAACTGGAGCATAATATGTAAGTTAACTTGCCAGAAACAGTAC TTAGGTAATTGTAGGGCCAGGACTATAAATGAGGCTTGCAAAATCATTTACCAGCAACTG AAGACCATTACCAACCACACAGAGAAAATCAAACCAAGCAGAAGGCTCTATGAAATAATG GTTGTAATAGCCAAGCTGAGAGCACTGAATTGTATGCTGTTCCATAAATGATATTTTCAG GTGTCATGGACTGTTTCCATCATGTATTCATCCAGAGTTATTAAATGTTAAACTCACACA CAATTGTATAAGCATGCTTTCTTTGTGTTCTAAATTATGTATAAACACATATGTTGCATT TAGAAGTCAAGCATAAATCACTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 897-1013, - strand, RNAz p=0.571065 | |
| 1129-1248, - strand, RNAz p=0.954793 | |
| 1289-1483, + strand, RNAz p=0.619659 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 897-1013, - strand, RNAz p=0.571065 | |
| 1129-1248, - strand, RNAz p=0.954793 | |
| 1289-1483, + strand, RNAz p=0.619659 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_015881, + |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-209, gnl|bosTau2|chr15 (26169485-26169277) | |
| 1-209, gnl|Hg17|chr11 (11986697-11986489) | |
| 1-209, gnl|Mm7|chr7 (108073915-108073707) | |
| 521-678, gnl|bosTau2|chr15 (26124192-26124035) | |
| 521-678, gnl|canFam2|chr21 (38223697-38223890) | |
| 521-678, gnl|danRer3|chr3 (39390988-39390839) | |
| 521-678, gnl|dasNov1|scaffold_19775 (6829-7000) | |
| 521-678, gnl|echTel1|scaffold_240649 (5399-5577) | |
| 521-678, gnl|fr1|chrUn (36866343-36866504) | |
| 521-678, gnl|galGal2|chr5 (5678797-5678633) | |
| 521-678, gnl|hg17|chr11 (11945056-11945243) | |
| 521-678, gnl|Hg17|chr11 (11945221-11945064) | |
| 521-678, gnl|mm7|chr7 (108035892-108036080) | |
| 521-678, gnl|Mm7|chr7 (108036058-108035901) | |
| 521-678, gnl|monDom2|scaffold_10 (62449930-62450116) | |
| 521-678, gnl|oryCun1|scaffold_191095 (39345-39518) | |
| 521-678, gnl|panTro1|chr9 (12197603-12197790) | |
| 521-678, gnl|rheMac2|chr14 (59947817-59947630) | |
| 521-678, gnl|rn3|chr1 (170047821-170048009) | |
| 521-678, gnl|tetNig1|chr5 (6128570-6128719) | |
| 521-678, gnl|xenTro1|scaffold_621 (583041-583217) | |
| 817-2424, gnl|bosTau2|chr15 (26121949-26120367) | |
| 817-2424, gnl|Hg17|chr11 (11942815-11941236) | |
| 817-2424, gnl|Mm7|chr7 (108033962-108032605) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-209, gnl|bosTau2|chr15 (26169485-26169277) | |
| 1-209, gnl|Hg17|chr11 (11986697-11986489) | |
| 1-209, gnl|Mm7|chr7 (108073915-108073707) | |
| 521-678, gnl|bosTau2|chr15 (26124192-26124035) | |
| 521-678, gnl|canFam2|chr21 (38223697-38223890) | |
| 521-678, gnl|danRer3|chr3 (39390988-39390839) | |
| 521-678, gnl|dasNov1|scaffold_19775 (6829-7000) | |
| 521-678, gnl|echTel1|scaffold_240649 (5399-5577) | |
| 521-678, gnl|fr1|chrUn (36866343-36866504) | |
| 521-678, gnl|galGal2|chr5 (5678797-5678633) | |
| 521-678, gnl|hg17|chr11 (11945056-11945243) | |
| 521-678, gnl|Hg17|chr11 (11945221-11945064) | |
| 521-678, gnl|mm7|chr7 (108035892-108036080) | |
| 521-678, gnl|Mm7|chr7 (108036058-108035901) | |
| 521-678, gnl|monDom2|scaffold_10 (62449930-62450116) | |
| 521-678, gnl|oryCun1|scaffold_191095 (39345-39518) | |
| 521-678, gnl|panTro1|chr9 (12197603-12197790) | |
| 521-678, gnl|rheMac2|chr14 (59947817-59947630) | |
| 521-678, gnl|rn3|chr1 (170047821-170048009) | |
| 521-678, gnl|tetNig1|chr5 (6128570-6128719) | |
| 521-678, gnl|xenTro1|scaffold_621 (583041-583217) | |
| 817-2424, gnl|bosTau2|chr15 (26121949-26120367) | |
| 817-2424, gnl|Hg17|chr11 (11942815-11941236) | |
| 817-2424, gnl|Mm7|chr7 (108033962-108032605) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| cbe (1.19617) | |
| sug (0.891039) | |
| spc (0.793561) | |
| cov (0.660764) | |
| ret (0.643666) | |
| fco (0.628832) | |
| hyp (0.571347) | |
| gul (0.532765) | |
| eye (0.511509) | |
| ece (0.45861) | |
| ski (0.440205) | |
| fbs (0.350693) | |
| fhi (0.339155) | |
| ova (0.258264) | |
| aor (0.195274) | |
| ton (0.1755) | |
| spl (0.143184) | |
| che (0.136314) | |
| bla (0.124347) | |
| clu (0.119646) | |
| pgl (0.118483) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (1.19617) | |
| sug (0.891039) | |
| spc (0.793561) | |
| cov (0.660764) | |
| ret (0.643666) | |
| fco (0.628832) | |
| hyp (0.571347) | |
| gul (0.532765) | |
| eye (0.511509) | |
| ece (0.45861) | |
| ski (0.440205) | |
| fbs (0.350693) | |
| fhi (0.339155) | |
| ova (0.258264) | |
| aor (0.195274) | |
| ton (0.1755) | |
| spl (0.143184) | |
| che (0.136314) | |
| bla (0.124347) | |
| clu (0.119646) | |
| pgl (0.118483) |