Non-Coding RNA Search

Ss1.1-mH3-MI-P-H3-adl-f-11-1-UM.s1.3

Sequence:


               
               AAGAAACCAAATCTAAGCAAAATTCTGAACTCTCAGGATATTAAGTAGATCCTTTTGGTA
TTACAGGCCCCTGACACAAAGGCACCTTCAGCTGTCAATCTCACCTTGGACTTTGTGGGA
GACACTGTACCCTCCCAGGCAGTGAGCACAGAGACACGCACAGTGACAGGCTGGGAAATA
CCTGTGTCATCGCTGGGCTGTCCTGACAGAGCACAGGCCTGCAAAAACCTGCATGTGTAC
TGTACCCTCAGTACCAGCGATGCTTCCAACCGGAGGGTTTCTAGCAGCCCCAAGAGCATG
CAGTATGGTTTCTTGCAAATATGCATTTTTTCCTCCCCAAAATGCCTCCCTGTACAGCTA
TCTTAACAGGATAATCAGAGCTCTTATCGTAGCAACAAAAACTCTAACCCAGAAGATTCG
TCATTGTCCTAATCAATCCCTGTACATTTTTTAATACCAACGACTCCCCATTTTCATTTT
GTTGGCTCTTTAGTATAAGTACATGCTTGGGAAAGTAAACAATGAAATAATCAATGTTCA
AAAACGTGAGTAGCAAAATCAGCCTAAAAGCTGATAACCATGTTCTAACGAAGTAATAGT
GTTTTAGCAATAAAATTACAGGATCGTTCTGTTACATAAAATTGTATAAAGCAGGAATCC
GAAAAATAAATGAGAGCAACAAGAACTTTCTATTTTAATATGAAGCTATTTCACTGCACT
CCTGAAAAAGAAGCCCAAGTTTTTGTGATTGTTAAAATAACGCATCAGCTTTTTTAAAAA
GTCTTTTTTATGTTTCCTTGTTCACTTGCTTCTTTTTATTGCCCCAAAGAGTATGGAATA
CATGTGTGTAATATAAAACATCAATATCATCTGAAACCTTGTACATAGGTTAGAAAATCT
AATGTTTTCAGGTTGGTTATGCTGCTACACTGCTTAGTTTTAACTGATGTGTTTTCATTG
TGCCAGAAGAGAATAAGTGAAAACAAAATCATATGGGTTTCCTAATCACACACACATACA
AATACCATTTTGTAAGTGAATGAAAGACAAAGCATTCTTTATCAACGTCTCTCCTTGGAC
CTCAGGGGGTCCCACATGACAGCTCTGCAAACCCAGGCCCTGCATCTTCAGTGCTCAAGG
CCATGCTCACACTGGAGGAGGGTGCATGTGCTAGAACGTCCAGTGCTGTGGTCCCAGGAA
CAGTCGGTAAAAGTTGCTTGATAACAGTGTGGTTGTACAAAATAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAACCAAATCTAAGCAAAATTCTGAACTCTCAGGATATTAAGTAGATCCTTTTGGTA
TTACAGGCCCCTGACACAAAGGCACCTTCAGCTGTCAATCTCACCTTGGACTTTGTGGGA
GACACTGTACCCTCCCAGGCAGTGAGCACAGAGACACGCACAGTGACAGGCTGGGAAATA
CCTGTGTCATCGCTGGGCTGTCCTGACAGAGCACAGGCCTGCAAAAACCTGCATGTGTAC
TGTACCCTCAGTACCAGCGATGCTTCCAACCGGAGGGTTTCTAGCAGCCCCAAGAGCATG
CAGTATGGTTTCTTGCAAATATGCATTTTTTCCTCCCCAAAATGCCTCCCTGTACAGCTA
TCTTAACAGGATAATCAGAGCTCTTATCGTAGCAACAAAAACTCTAACCCAGAAGATTCG
TCATTGTCCTAATCAATCCCTGTACATTTTTTAATACCAACGACTCCCCATTTTCATTTT
GTTGGCTCTTTAGTATAAGTACATGCTTGGGAAAGTAAACAATGAAATAATCAATGTTCA
AAAACGTGAGTAGCAAAATCAGCCTAAAAGCTGATAACCATGTTCTAACGAAGTAATAGT
GTTTTAGCAATAAAATTACAGGATCGTTCTGTTACATAAAATTGTATAAAGCAGGAATCC
GAAAAATAAATGAGAGCAACAAGAACTTTCTATTTTAATATGAAGCTATTTCACTGCACT
CCTGAAAAAGAAGCCCAAGTTTTTGTGATTGTTAAAATAACGCATCAGCTTTTTTAAAAA
GTCTTTTTTATGTTTCCTTGTTCACTTGCTTCTTTTTATTGCCCCAAAGAGTATGGAATA
CATGTGTGTAATATAAAACATCAATATCATCTGAAACCTTGTACATAGGTTAGAAAATCT
AATGTTTTCAGGTTGGTTATGCTGCTACACTGCTTAGTTTTAACTGATGTGTTTTCATTG
TGCCAGAAGAGAATAAGTGAAAACAAAATCATATGGGTTTCCTAATCACACACACATACA
AATACCATTTTGTAAGTGAATGAAAGACAAAGCATTCTTTATCAACGTCTCTCCTTGGAC
CTCAGGGGGTCCCACATGACAGCTCTGCAAACCCAGGCCCTGCATCTTCAGTGCTCAAGG
CCATGCTCACACTGGAGGAGGGTGCATGTGCTAGAACGTCCAGTGCTGTGGTCCCAGGAA
CAGTCGGTAAAAGTTGCTTGATAACAGTGTGGTTGTACAAAATAAATA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               70-1248, gnl|bosTau2|chr23 (2033756-2034909)
               

               
               70-1248, gnl|Hg17|chr6 (56998851-57000029)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-1248, gnl|bosTau2|chr23 (2033756-2034909)
               

               
               70-1248, gnl|Hg17|chr6 (56998851-57000029)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fcc (0.39557)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               kid (0.129735)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               bla (0.248694)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               kid (0.129735)

	70-1248, gnl\|bosTau2\|chr23 (2033756-2034909)
	70-1248, gnl\|Hg17\|chr6 (56998851-57000029)

	fcc (0.39557)
	bla (0.248694)
	mgp (0.230681)
	aor (0.195274)
	kid (0.129735)