Non-Coding RNA Search

Ss1.1-mH3-MI-P-H3-afb-b-12-1-UM.s1.3

Sequence:


               
               TGAGTCGTAGCAGTGTTATTCTACGCTTTTTAAAAGAGGCGTCCTCCTCGTGTCCATGAA
ACGTGGTCCCCCCAGCCCAGTGGCAGAGGTGTTCCTTAAAGACTTGAATATGTGAGTGTC
TGTATGTAGTTCCTTAGAGGTTACTCCTCTACGTGATGTGCAGTTATATGGGATGAACCC
TTTGAAACGTCCGACACAGCTTCCGTGGCTAGAAGGTGGAAACCAAAACCCTCACGACAG
TTTTTCCTCTGGCAGCTGGTGCTTGGGCAGCTGTTTTGTTCAGTGGGGTTTCTTTTCTTT
TTGCTTCTAATGCGGAACTCACACATCGCTCACACATACGCATACACTCACGTACCTAAA
CTGATGGTTCTCTGGCTGTCTTCCTGTGTTCCATGTAGATTTGTCGAGCAGCATGTATTC
TCAGCGTGCACCTCCACCTTTGCGTGGTCCGCATCCTCTCTCTGAGAGTACCTCGCAGGG
CTTCTGCCTGATCTCTGTAGTAGTTTGTCCGTCCGTGCATCCGCCCATCCATCCATCCAT
CCATCCATGTATCCACCCGTGTCTTCTAACATGCGTGTGTGCTGTGCAGCTGTCATGTCA
TGCTTTCGAAGAAGAGAATAGCTGCCCGTAGCAGCCATCCGTCTGGACAATAGCAAACAC
TCTAGATAAGTTATTTTGCACTTTCTTATGTATAAAATGGGTAGAAACTTATTTTTGCTT
TGTATCATTTAAATACATTTTGTTTTGGTAAATGGACTGTGTATAAAATATTTATGCCAT
TAAAACTGTTTTTAGAAAGTATTTTTAATTTCAGCAAGTTTGGTTACTTGTTGCATGACT
CTTAACACAGCTGACTTTTTGTGTCAGTGCAATGTATATTTTTTGGTCCTGTTATTAACT
TGTAAGCCCTCGTAATGGCCAATTATTTGTACAGCAACAGAAGTAAATTGAAGACACTGG
CTAAGACTGGATCGATTGTGGACTTTTGTACTATACTGCAGAATCCAATACCTGTTCTTT
GGTGGTTAATGTAAAAGGCCTGAAGAATTACTATCTAGTGTGCAATCTGTGATAACTGAA
TGTTCATTGTATATCTGTCTCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTCGTAGCAGTGTTATTCTACGCTTTTTAAAAGAGGCGTCCTCCTCGTGTCCATGAA
ACGTGGTCCCCCCAGCCCAGTGGCAGAGGTGTTCCTTAAAGACTTGAATATGTGAGTGTC
TGTATGTAGTTCCTTAGAGGTTACTCCTCTACGTGATGTGCAGTTATATGGGATGAACCC
TTTGAAACGTCCGACACAGCTTCCGTGGCTAGAAGGTGGAAACCAAAACCCTCACGACAG
TTTTTCCTCTGGCAGCTGGTGCTTGGGCAGCTGTTTTGTTCAGTGGGGTTTCTTTTCTTT
TTGCTTCTAATGCGGAACTCACACATCGCTCACACATACGCATACACTCACGTACCTAAA
CTGATGGTTCTCTGGCTGTCTTCCTGTGTTCCATGTAGATTTGTCGAGCAGCATGTATTC
TCAGCGTGCACCTCCACCTTTGCGTGGTCCGCATCCTCTCTCTGAGAGTACCTCGCAGGG
CTTCTGCCTGATCTCTGTAGTAGTTTGTCCGTCCGTGCATCCGCCCATCCATCCATCCAT
CCATCCATGTATCCACCCGTGTCTTCTAACATGCGTGTGTGCTGTGCAGCTGTCATGTCA
TGCTTTCGAAGAAGAGAATAGCTGCCCGTAGCAGCCATCCGTCTGGACAATAGCAAACAC
TCTAGATAAGTTATTTTGCACTTTCTTATGTATAAAATGGGTAGAAACTTATTTTTGCTT
TGTATCATTTAAATACATTTTGTTTTGGTAAATGGACTGTGTATAAAATATTTATGCCAT
TAAAACTGTTTTTAGAAAGTATTTTTAATTTCAGCAAGTTTGGTTACTTGTTGCATGACT
CTTAACACAGCTGACTTTTTGTGTCAGTGCAATGTATATTTTTTGGTCCTGTTATTAACT
TGTAAGCCCTCGTAATGGCCAATTATTTGTACAGCAACAGAAGTAAATTGAAGACACTGG
CTAAGACTGGATCGATTGTGGACTTTTGTACTATACTGCAGAATCCAATACCTGTTCTTT
GGTGGTTAATGTAAAAGGCCTGAAGAATTACTATCTAGTGTGCAATCTGTGATAACTGAA
TGTTCATTGTATATCTGTCTCTGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               568-724, - strand, RNAz p=0.908929
               

               
               765-884, + strand, RNAz p=0.566929

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               568-724, - strand, RNAz p=0.908929
               

               
               765-884, + strand, RNAz p=0.566929

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014991, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014991, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-532, gnl|bosTau2|chr6 (57994073-57994610)
               

               
               1-532, gnl|Hg17|chr4 (85949101-85948529)
               

               
               1-532, gnl|Mm7|chr5 (101022491-101021962)
               


               
               536-1104, gnl|bosTau2|chr6 (57994586-57995155)
               

               
               536-1104, gnl|Hg17|chr4 (85948561-85947986)
               

               
               536-1104, gnl|Mm7|chr5 (101021985-101021419)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-532, gnl|bosTau2|chr6 (57994073-57994610)
               

               
               1-532, gnl|Hg17|chr4 (85949101-85948529)
               

               
               1-532, gnl|Mm7|chr5 (101022491-101021962)
               


               
               536-1104, gnl|bosTau2|chr6 (57994586-57995155)
               

               
               536-1104, gnl|Hg17|chr4 (85948561-85947986)
               

               
               536-1104, gnl|Mm7|chr5 (101021985-101021419)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbe (0.478469)
               

               
               fhi (0.339155)
               

               
               spl (0.286369)
               

               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.478469)
               

               
               fhi (0.339155)
               

               
               spl (0.286369)
               

               
               ret (0.257467)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               spc (0.113366)

	568-724, - strand, RNAz p=0.908929
	765-884, + strand, RNAz p=0.566929

	1-532, gnl\|bosTau2\|chr6 (57994073-57994610)
	1-532, gnl\|Hg17\|chr4 (85949101-85948529)
	1-532, gnl\|Mm7\|chr5 (101022491-101021962)

	536-1104, gnl\|bosTau2\|chr6 (57994586-57995155)
	536-1104, gnl\|Hg17\|chr4 (85948561-85947986)
	536-1104, gnl\|Mm7\|chr5 (101021985-101021419)

	cbe (0.478469)
	fhi (0.339155)
	spl (0.286369)
	ret (0.257467)
	fcc (0.197785)
	fbs (0.175346)
	lun (0.150489)
	nca (0.136874)
	ova (0.129132)
	spc (0.113366)