Non-Coding RNA Search

Ss1.1-mH3-MI-P-H3-afb-h-09-1-UM.s1.3

Sequence:


               
               AAAACTTTAAAAGAATCATTGAGTAGAAAATTAATATTTTAAGTTTCTTTCCCTTTTCAT
TGGCAATAAATTAACATGTAAAATCTGTTAATAACTATATATTATATATGGACTAGAATA
TAGGAAACTGATTGATAAGGACATAAATACATCAAGACTCTGGTGTCATGAAAGCACAAG
AATAAAGCCTGGAAATGGTCCCAGAATCCAAGATTCCAATAACCTTTGCATCAGTTTCAC
TATTTTTGGTATTTTGCATAATATATGGATCCTTAATTCAAATAAAGAAAAAAAGTTTCT
CAGTCCCACTTTATTTATTTCAATTCCTGCCTTTCCCCTTGCTGGGGAGGTAGTAGAAAT
TCTATGCCATCTATTTTTGTGAATTCTATGATTTTGTCCATGGCTTCTCCAATGAAAACA
GGTTCCAGAATAAAGGAGTTGATTAGACCAAACTGTGCTAATTGACTACAAAAGAAATTA
GTGAGCAGCTTTTCTCCTCTCTAAACACTGACCAATTAGATGTTTCCATAATTCCATGTA
TTATGTATAGTACACTCTATAAATGTAAATGTAATGCTTGTTAAGAAAAGTGCAATTTAT
TGTACATTGTCCCAACAAATGTTTACTTTTATAATTGTTATGAACTTGAATTGGATTAGT
ATCTTGTTTTCACGTGTGAATGAAGCCTTGTGAAGTAAACAAATGCAAGAAGGTAGCAAG
GTGACTGTTTTTGTGAGCCAGTGATGTTTTCAATGCTTTGTGTTGCCCCTTTGGCCCCAT
TAAGCAGTAATAAACATTTGTTCTGGAAACCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACTTTAAAAGAATCATTGAGTAGAAAATTAATATTTTAAGTTTCTTTCCCTTTTCAT
TGGCAATAAATTAACATGTAAAATCTGTTAATAACTATATATTATATATGGACTAGAATA
TAGGAAACTGATTGATAAGGACATAAATACATCAAGACTCTGGTGTCATGAAAGCACAAG
AATAAAGCCTGGAAATGGTCCCAGAATCCAAGATTCCAATAACCTTTGCATCAGTTTCAC
TATTTTTGGTATTTTGCATAATATATGGATCCTTAATTCAAATAAAGAAAAAAAGTTTCT
CAGTCCCACTTTATTTATTTCAATTCCTGCCTTTCCCCTTGCTGGGGAGGTAGTAGAAAT
TCTATGCCATCTATTTTTGTGAATTCTATGATTTTGTCCATGGCTTCTCCAATGAAAACA
GGTTCCAGAATAAAGGAGTTGATTAGACCAAACTGTGCTAATTGACTACAAAAGAAATTA
GTGAGCAGCTTTTCTCCTCTCTAAACACTGACCAATTAGATGTTTCCATAATTCCATGTA
TTATGTATAGTACACTCTATAAATGTAAATGTAATGCTTGTTAAGAAAAGTGCAATTTAT
TGTACATTGTCCCAACAAATGTTTACTTTTATAATTGTTATGAACTTGAATTGGATTAGT
ATCTTGTTTTCACGTGTGAATGAAGCCTTGTGAAGTAAACAAATGCAAGAAGGTAGCAAG
GTGACTGTTTTTGTGAGCCAGTGATGTTTTCAATGCTTTGTGTTGCCCCTTTGGCCCCAT
TAAGCAGTAATAAACATTTGTTCTGGAAACCAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               694-809, - strand, RNAz p=0.751794

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               694-809, - strand, RNAz p=0.751794

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-813, gnl|bosTau2|chr16 (44639408-44640236)
               

               
               9-813, gnl|Hg17|chr1 (171695268-171696102)
               

               
               9-813, gnl|Mm7|chr1 (160182052-160181255)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-813, gnl|bosTau2|chr16 (44639408-44640236)
               

               
               9-813, gnl|Hg17|chr1 (171695268-171696102)
               

               
               9-813, gnl|Mm7|chr1 (160182052-160181255)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fco (0.314416)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               liv (0.146284)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)

	9-813, gnl\|bosTau2\|chr16 (44639408-44640236)
	9-813, gnl\|Hg17\|chr1 (171695268-171696102)
	9-813, gnl\|Mm7\|chr1 (160182052-160181255)

	fco (0.314416)
	nlu (0.191681)
	sag (0.182715)
	duo (0.172801)
	nje (0.16592)
	liv (0.146284)
	ret (0.128733)
	ebs (0.118301)