Non-Coding RNA Search

Ss1.1-mH3-MI-P-H3-afj-h-07-1-UM.s1.3

Sequence:


               
               ATTAAAAATAAAAAGACGCTGGCACTTCTCATATACTTGGATCCCTAATGAACCTCAGTC
TTTGAATTTTTGAGACAGACTGACTACATTAAGAATTTTCAGCAATAGAAAAAACAAAAC
CTTTATAACTTGCACCAAGCAAGAACATACAAATGCAGCTGACTGCATTCAGTATGAATA
TAATCACATTAAAATGGTTACTATGCAGCACAGGAATTCACTCTTAAGTATACTTGGGTT
GAAACTTTTGAATCGTTTTTAATACTGATTAAAATGACTCAAAGGCATTTGTAGTCATCA
CCCTGCTGTATCTTGGAAGTCATGAGCTTAACCTAAGATGGCAGAATAATAAGCAGTGAT
TTATTCAACCTGATTATAAGTAAGTGTAGTCCGTTGGGTTATGTTATTTGAGACTGAAAA
ATCAGCTGGACGTAAATGGTTAAATTACTTTTATTCTCCCCCCCTCCCCAAAATCTGGAG
TTAAAATGAGTTTCATGCTGGAGGTGGGATGGTGAGTTTTCACTATTTATGAAAGAAGGT
TTACGGGATATTAGATAACACGGATCTGTCTGGATGGTGTTTACATTTGATTTATTTGGG
ACTTTATTGAAGTAATACACTTGGAAGATAGTGCTTTTATTCTGATGAAAATAGGATTCA
GAGTATGAGCTTAAATCTCTTTTTATGAATATTTCTGGTCAGTGATAATCTCTACCTACT
TTCGCAACCAAATAGGCCAGTTCAAGTTTTTCAGAGTCTATAATCTTACTAAAAATCTGT
CTCATCAGTGTGCTTTGAGTGTGGAATTTAAAAACATTCAAAACATAAACCACAAAATAC
AACAGAGGGCACCTATGTCTGGCATCAGTTTCTTTCCCAAGTTCATTTTGTTGTTCTTTA
AACTACAAATGAAAGCTTTATCATAGACTCTTCTGGAAAATACTGAGCTACTTTCCTTCA
AGAATTATGAATGCTTCTCTTGATTCTGTAGAAATCCTCTATTGTTTAAATAGCAAAGAA
TAATACAACTAACAGTACCTTTTTTTGTTCAAATGGGGAAAATGTTTTCGATGCCAGTTC
TTTGGGTTAATACAAGCTTATAAGAGAAAATTTTTTTTGAACCATAAATGTGCATTAAAA
TGGTGGCACTGCTTAATTAATGGTTGAATAAGGTAGAGGGTTTTTTAATTCTGATATTCT
CTACGCGCTTAATAATTATTAGTAAATAGTCACATTTGCACTCAGCAACCATTGGCGTTT
GTTGGTGTTTTGTGTTTGGCATTAGCATTGCCCAGCATCACAGCCATGGAATGGTCCTCC
CTCTGTAAGGATCCACATCATGTTTCCGTTTGTATTATTAAGTTTTGGCTATTTTATTTC
AAACTAGAGTTTGAACACTGGAAAATCATTGCTCAGTGATTTATAATTTGAGACTTGGAT
TATTTATCGAGGGCTGTTTGTATATTTTGTCGATGAGTAATACTGCGCTGCCATTCTGGC
AGCTGTCATGGTTCTATATAAATGCCCTTCATCTGTCCCTCTGATGTTGCATGTTTTCAG
TGGTTTGGAAGTTTTGTATATTTATTGTATTCACACAGAGTGTCATAAAATAAAATGCTG
TTTACTGGAAAAAAAAAAAAAAAATTTTATATACTGTGTTAGCACTTCAGAGGCAGAATT
GATGCTGAGGACTTAATGTATATAGAAATACCACATTCTGATATTTTAAAACTGATCTGT
GTGTGATTCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTAAAAATAAAAAGACGCTGGCACTTCTCATATACTTGGATCCCTAATGAACCTCAGTC
TTTGAATTTTTGAGACAGACTGACTACATTAAGAATTTTCAGCAATAGAAAAAACAAAAC
CTTTATAACTTGCACCAAGCAAGAACATACAAATGCAGCTGACTGCATTCAGTATGAATA
TAATCACATTAAAATGGTTACTATGCAGCACAGGAATTCACTCTTAAGTATACTTGGGTT
GAAACTTTTGAATCGTTTTTAATACTGATTAAAATGACTCAAAGGCATTTGTAGTCATCA
CCCTGCTGTATCTTGGAAGTCATGAGCTTAACCTAAGATGGCAGAATAATAAGCAGTGAT
TTATTCAACCTGATTATAAGTAAGTGTAGTCCGTTGGGTTATGTTATTTGAGACTGAAAA
ATCAGCTGGACGTAAATGGTTAAATTACTTTTATTCTCCCCCCCTCCCCAAAATCTGGAG
TTAAAATGAGTTTCATGCTGGAGGTGGGATGGTGAGTTTTCACTATTTATGAAAGAAGGT
TTACGGGATATTAGATAACACGGATCTGTCTGGATGGTGTTTACATTTGATTTATTTGGG
ACTTTATTGAAGTAATACACTTGGAAGATAGTGCTTTTATTCTGATGAAAATAGGATTCA
GAGTATGAGCTTAAATCTCTTTTTATGAATATTTCTGGTCAGTGATAATCTCTACCTACT
TTCGCAACCAAATAGGCCAGTTCAAGTTTTTCAGAGTCTATAATCTTACTAAAAATCTGT
CTCATCAGTGTGCTTTGAGTGTGGAATTTAAAAACATTCAAAACATAAACCACAAAATAC
AACAGAGGGCACCTATGTCTGGCATCAGTTTCTTTCCCAAGTTCATTTTGTTGTTCTTTA
AACTACAAATGAAAGCTTTATCATAGACTCTTCTGGAAAATACTGAGCTACTTTCCTTCA
AGAATTATGAATGCTTCTCTTGATTCTGTAGAAATCCTCTATTGTTTAAATAGCAAAGAA
TAATACAACTAACAGTACCTTTTTTTGTTCAAATGGGGAAAATGTTTTCGATGCCAGTTC
TTTGGGTTAATACAAGCTTATAAGAGAAAATTTTTTTTGAACCATAAATGTGCATTAAAA
TGGTGGCACTGCTTAATTAATGGTTGAATAAGGTAGAGGGTTTTTTAATTCTGATATTCT
CTACGCGCTTAATAATTATTAGTAAATAGTCACATTTGCACTCAGCAACCATTGGCGTTT
GTTGGTGTTTTGTGTTTGGCATTAGCATTGCCCAGCATCACAGCCATGGAATGGTCCTCC
CTCTGTAAGGATCCACATCATGTTTCCGTTTGTATTATTAAGTTTTGGCTATTTTATTTC
AAACTAGAGTTTGAACACTGGAAAATCATTGCTCAGTGATTTATAATTTGAGACTTGGAT
TATTTATCGAGGGCTGTTTGTATATTTTGTCGATGAGTAATACTGCGCTGCCATTCTGGC
AGCTGTCATGGTTCTATATAAATGCCCTTCATCTGTCCCTCTGATGTTGCATGTTTTCAG
TGGTTTGGAAGTTTTGTATATTTATTGTATTCACACAGAGTGTCATAAAATAAAATGCTG
TTTACTGGAAAAAAAAAAAAAAAATTTTATATACTGTGTTAGCACTTCAGAGGCAGAATT
GATGCTGAGGACTTAATGTATATAGAAATACCACATTCTGATATTTTAAAACTGATCTGT
GTGTGATTCTCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               9-1750, gnl|bosTau2|chr10 (3556708-3558445)
               

               
               9-1750, gnl|Hg17|chr5 (77808280-77810046)
               

               
               9-1750, gnl|Mm7|chr13 (91265897-91264240)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1750, gnl|bosTau2|chr10 (3556708-3558445)
               

               
               9-1750, gnl|Hg17|chr5 (77808280-77810046)
               

               
               9-1750, gnl|Mm7|chr13 (91265897-91264240)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               fcc (0.593354)
               

               
               tra (0.492368)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.593354)
               

               
               tra (0.492368)
               

               
               fco (0.314416)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               ebs (0.118301)
               

               
               ldo (0.0970026)

	9-1750, gnl\|bosTau2\|chr10 (3556708-3558445)
	9-1750, gnl\|Hg17\|chr5 (77808280-77810046)
	9-1750, gnl\|Mm7\|chr13 (91265897-91264240)

	fcc (0.593354)
	tra (0.492368)
	fco (0.314416)
	lin (0.291206)
	ova (0.258264)
	ret (0.257467)
	sug (0.254582)
	cbe (0.239234)
	aor (0.195274)
	mgm (0.180343)
	sin (0.174948)
	fhi (0.169578)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	lyg (0.133103)
	nmm (0.132802)
	kid (0.129735)
	ebs (0.118301)
	ldo (0.0970026)