Non-Coding RNA Search

Ss1.1-mO1-MI-P-O1-abx-f-01-1-UM.s1.3.5

Sequence:


               
               GATTAGAAAGAAAATTCAAGAGACAGGTCAATCAATTGCAAGGCATGGACCTTACCTGTA
GCCTAATTAAAACCAACAAACCTATTTTAAAGTATGCAATCATCAAGGAAATCAACACCA
GATATCTAGTAATATTAAAGAGGCACTGTGATTAGTTTTTATAAGGTCCCTATATCTTGG
AAAGCAAGGGTTCTCAAAGTATGGTGCGTAGCCCCCAGGAGGATGAAAACTATTTTTATA
ATACCAACAACATGACTGCCTCTTTCACAGTGCTATCATTTGTACTGAGAGCTGCAAAAG
TTACTGGATAAAACTGCTGGCACCTGAACACATCAAGAAGGCAGAACCTCACCTGCAGTC
ATGTTCTCCACTGTATCTCAAGGGGGAAAACCAGTTTTACTTTAAGAATGTCATTAATGA
AGTAGTAAAATTGATTAGTTCTCTTGAACTTTGACCTCCTGAGTACACATTTCTTAATAT
TCTATGATAAAATGAGGAGCTGCCACAGCACTTCTGCTATACTCTGAAGATGGCAGTCCT
GTCGCCTTTATCACGAAATGTCTTTTTTACTTGAAAAAAGAGCTGACACCAATTGTGATG
ATCCACATTAGCACTAACTATGTTAATTCAGACTTATACATTTGGCAGGCATTTTTCTGG
AAAATGAACAAAGTGAGCCTTTCACGTTAAGGAAAACAATTTTATGTATTTGTTGAAAGT
GACTTAAAATGTAAGTTTTCAGTCAAAAATCAGAGTTTTAGAAACCCTCTATCCAACACT
TAGACTTCATAACTTCCCAATACATAAAGACTTCTAATGACATGGTGGTAATATTCACAA
ATGTGAATTTTTTCTTTTGTATAATGAAATGTGTCAACATTTAAAAATCTGCGTAACTCA
GTGTAGCCATATTTTCCAAGTGATCAATTGATACTATAAAGTTACATATGTATAAAATAC
ATTCAAAGTGTAAGACAAGCCAATGGATTTTAACATAATAAATATAAGAGTTACTTAAGT
GGTTTCAGATTCTACATCACACTAACCTTTAAGAAACAACTTGTCCTTTTGGTGCAGCAA
CAAAATCACTTGAAAATTATCAAAATATGCTTCCCTTTCCAACCACGTATGTGTGAGGTC
AGCCTTTCCTCATACACTTAAATGTAAAGGTAAAATACAGGAAGCAGTGGGGTGACTGCA
GGAGCAGACACATGATGCCAGCCATTTTCTCACAAACCAGTTCATTAAAGGATTCGTGAA
AATGTAAACTAATGTCACTCATTACTAAATTTTTTGGACAGTACTTTTCAAATGTTATAG
TAAATGTGCAATGGGTTTGTCACTGCTTTTAAATAATAAATATTTTAAACCTTTAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTAGAAAGAAAATTCAAGAGACAGGTCAATCAATTGCAAGGCATGGACCTTACCTGTA
GCCTAATTAAAACCAACAAACCTATTTTAAAGTATGCAATCATCAAGGAAATCAACACCA
GATATCTAGTAATATTAAAGAGGCACTGTGATTAGTTTTTATAAGGTCCCTATATCTTGG
AAAGCAAGGGTTCTCAAAGTATGGTGCGTAGCCCCCAGGAGGATGAAAACTATTTTTATA
ATACCAACAACATGACTGCCTCTTTCACAGTGCTATCATTTGTACTGAGAGCTGCAAAAG
TTACTGGATAAAACTGCTGGCACCTGAACACATCAAGAAGGCAGAACCTCACCTGCAGTC
ATGTTCTCCACTGTATCTCAAGGGGGAAAACCAGTTTTACTTTAAGAATGTCATTAATGA
AGTAGTAAAATTGATTAGTTCTCTTGAACTTTGACCTCCTGAGTACACATTTCTTAATAT
TCTATGATAAAATGAGGAGCTGCCACAGCACTTCTGCTATACTCTGAAGATGGCAGTCCT
GTCGCCTTTATCACGAAATGTCTTTTTTACTTGAAAAAAGAGCTGACACCAATTGTGATG
ATCCACATTAGCACTAACTATGTTAATTCAGACTTATACATTTGGCAGGCATTTTTCTGG
AAAATGAACAAAGTGAGCCTTTCACGTTAAGGAAAACAATTTTATGTATTTGTTGAAAGT
GACTTAAAATGTAAGTTTTCAGTCAAAAATCAGAGTTTTAGAAACCCTCTATCCAACACT
TAGACTTCATAACTTCCCAATACATAAAGACTTCTAATGACATGGTGGTAATATTCACAA
ATGTGAATTTTTTCTTTTGTATAATGAAATGTGTCAACATTTAAAAATCTGCGTAACTCA
GTGTAGCCATATTTTCCAAGTGATCAATTGATACTATAAAGTTACATATGTATAAAATAC
ATTCAAAGTGTAAGACAAGCCAATGGATTTTAACATAATAAATATAAGAGTTACTTAAGT
GGTTTCAGATTCTACATCACACTAACCTTTAAGAAACAACTTGTCCTTTTGGTGCAGCAA
CAAAATCACTTGAAAATTATCAAAATATGCTTCCCTTTCCAACCACGTATGTGTGAGGTC
AGCCTTTCCTCATACACTTAAATGTAAAGGTAAAATACAGGAAGCAGTGGGGTGACTGCA
GGAGCAGACACATGATGCCAGCCATTTTCTCACAAACCAGTTCATTAAAGGATTCGTGAA
AATGTAAACTAATGTCACTCATTACTAAATTTTTTGGACAGTACTTTTCAAATGTTATAG
TAAATGTGCAATGGGTTTGTCACTGCTTTTAAATAATAAATATTTTAAACCTTTAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               610-1148, gnl|bosTau2|chr9 (17854876-17855426)
               


               
               613-1082, gnl|bosTau2|chr11 (64469782-64469303)
               

               
               613-1082, gnl|canFam2|chr17 (14142232-14143028)
               

               
               613-1082, gnl|hg17|chr2 (15360154-15360898)
               

               
               613-1082, gnl|Hg17|chr2 (15360153-15360613)
               

               
               613-1082, gnl|loxAfr1|scaffold_52867 (3331-4148)
               

               
               613-1082, gnl|panTro1|chr12 (16139101-16139844)
               

               
               613-1082, gnl|rheMac2|chr13 (15270198-15270936)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               610-1148, gnl|bosTau2|chr9 (17854876-17855426)
               


               
               613-1082, gnl|bosTau2|chr11 (64469782-64469303)
               

               
               613-1082, gnl|canFam2|chr17 (14142232-14143028)
               

               
               613-1082, gnl|hg17|chr2 (15360154-15360898)
               

               
               613-1082, gnl|Hg17|chr2 (15360153-15360613)
               

               
               613-1082, gnl|loxAfr1|scaffold_52867 (3331-4148)
               

               
               613-1082, gnl|panTro1|chr12 (16139101-16139844)
               

               
               613-1082, gnl|rheMac2|chr13 (15270198-15270936)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               gul (2.48624)
               

               
               aor (2.34329)
               

               
               ret (0.643666)
               

               
               ski (0.440205)
               

               
               kid (0.389206)
               

               
               fhi (0.339155)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (2.48624)
               

               
               aor (2.34329)
               

               
               ret (0.643666)
               

               
               ski (0.440205)
               

               
               kid (0.389206)
               

               
               fhi (0.339155)
               

               
               liv (0.292569)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               rec (0.17307)
               

               
               lin (0.145603)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	610-1148, gnl\|bosTau2\|chr9 (17854876-17855426)

	613-1082, gnl\|bosTau2\|chr11 (64469782-64469303)
	613-1082, gnl\|canFam2\|chr17 (14142232-14143028)
	613-1082, gnl\|hg17\|chr2 (15360154-15360898)
	613-1082, gnl\|Hg17\|chr2 (15360153-15360613)
	613-1082, gnl\|loxAfr1\|scaffold_52867 (3331-4148)
	613-1082, gnl\|panTro1\|chr12 (16139101-16139844)
	613-1082, gnl\|rheMac2\|chr13 (15270198-15270936)

	gul (2.48624)
	aor (2.34329)
	ret (0.643666)
	ski (0.440205)
	kid (0.389206)
	fhi (0.339155)
	liv (0.292569)
	cbe (0.239234)
	pgl (0.236967)
	mgp (0.230681)
	cty (0.20816)
	rec (0.17307)
	lin (0.145603)
	sug (0.127291)
	tra (0.123092)
	spc (0.113366)