Non-Coding RNA Search

Ss1.1-mO1-MI-P-O1-abx-g-10-1-UM.s1.3.5

Sequence:


               
               GAATCTGTTAAAATGTGTTTTGATACAGATAGATATATATATATATATGAAAAACTTGTG
TTTTTAAAATGTGGCCAGGCAAGAGTTCCCTGGTGGCTCAGTAGGTTAAAGATCAAGCAT
TGTCGCTGTTGTGACATGGGTTTGATCCCTGGCACAGGAACTTCCACTTGCCTTGGACAT
GGCCAAAATAAAATAAATAAATAGAATAAAATAAACTCTGGCCAGGCAGAGGGACTAGAA
AAAGAGGTTCTGTTGCCTGGTTCCTGACCACATAAATTATTTTCACTGAGGAACTGTTAA
ATTTACTAAAACTACACTGCACTATGTTAGTAATCCACACACAATGCTAAATAGATCTGC
CTTAAAAAAATTTAGAAGGAAACATTGTTGCCCAGTGTTGTTTGGAAACTCAAAATTTAT
ATTTGCAGTATGATATAAATTGAAGCAAACTCTCCCCCCAACCCATACACATGCAGGTTG
TTTTTTTTTTTCTTTGTTTTTTGCTTTTTTAGGGCCACGCATGCAACATATGGAAGTTCC
CAGGCTAGGGGTTGAATAGGAGCTGCAGCTGCCAGCCTACACCGCAGTCACAGCAATGCC
AGATCCTAACTATGTCTATGACCTACACCCCAGCTCACAGCAACCCTGGATCCTTAACCT
ACTGAGCGAGGCCAGGGATCCAACCCCCATCCTCATAGATCCTAGTCAGGTTCGTTATTG
CTGAGCCACGATGGGGACTCCATACACATGCAGTTTTGTCTAATGAAAATTTTGCTGTGA
CTGTTTATAATTGGCAGTATTTCTTCCAGAAGAAGGTAGAATAAGAATCGCACTTATCCT
AAAGTGCATTAATAAAACCACATTTTGAAATTAAAAAAAAAAAAAAAAGTCATGAAAGAC
TAGTTCTAATTAATAGTTAATCTTTTTCGAAGTCCCTGTTGTCTCTTTTCTAAACATTTA
ACCATTCTTGAATGCCATTCTCAACTATTAATATTTATTTACTGAAAGCATTAATAGCAT
TCTATAAACATGCATTTTTAAATATTTTATTCCTAAGCTTACCCATTGTTAATTATGGGT
AACTAATAAATAGTAAATGTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATCTGTTAAAATGTGTTTTGATACAGATAGATATATATATATATATGAAAAACTTGTG
TTTTTAAAATGTGGCCAGGCAAGAGTTCCCTGGTGGCTCAGTAGGTTAAAGATCAAGCAT
TGTCGCTGTTGTGACATGGGTTTGATCCCTGGCACAGGAACTTCCACTTGCCTTGGACAT
GGCCAAAATAAAATAAATAAATAGAATAAAATAAACTCTGGCCAGGCAGAGGGACTAGAA
AAAGAGGTTCTGTTGCCTGGTTCCTGACCACATAAATTATTTTCACTGAGGAACTGTTAA
ATTTACTAAAACTACACTGCACTATGTTAGTAATCCACACACAATGCTAAATAGATCTGC
CTTAAAAAAATTTAGAAGGAAACATTGTTGCCCAGTGTTGTTTGGAAACTCAAAATTTAT
ATTTGCAGTATGATATAAATTGAAGCAAACTCTCCCCCCAACCCATACACATGCAGGTTG
TTTTTTTTTTTCTTTGTTTTTTGCTTTTTTAGGGCCACGCATGCAACATATGGAAGTTCC
CAGGCTAGGGGTTGAATAGGAGCTGCAGCTGCCAGCCTACACCGCAGTCACAGCAATGCC
AGATCCTAACTATGTCTATGACCTACACCCCAGCTCACAGCAACCCTGGATCCTTAACCT
ACTGAGCGAGGCCAGGGATCCAACCCCCATCCTCATAGATCCTAGTCAGGTTCGTTATTG
CTGAGCCACGATGGGGACTCCATACACATGCAGTTTTGTCTAATGAAAATTTTGCTGTGA
CTGTTTATAATTGGCAGTATTTCTTCCAGAAGAAGGTAGAATAAGAATCGCACTTATCCT
AAAGTGCATTAATAAAACCACATTTTGAAATTAAAAAAAAAAAAAAAAGTCATGAAAGAC
TAGTTCTAATTAATAGTTAATCTTTTTCGAAGTCCCTGTTGTCTCTTTTCTAAACATTTA
ACCATTCTTGAATGCCATTCTCAACTATTAATATTTATTTACTGAAAGCATTAATAGCAT
TCTATAAACATGCATTTTTAAATATTTTATTCCTAAGCTTACCCATTGTTAATTATGGGT
AACTAATAAATAGTAAATGTAATG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               219-479, gnl|bosTau2|chr4 (3935616-3935352)
               

               
               219-479, gnl|Hg17|chr7 (7056845-7057103)
               


               
               741-1104, gnl|bosTau2|chr4 (3935367-3935003)
               

               
               741-1104, gnl|Hg17|chr7 (7057088-7057444)
               

               
               741-1104, gnl|Mm7|chr6 (7829493-7829827)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               219-479, gnl|bosTau2|chr4 (3935616-3935352)
               

               
               219-479, gnl|Hg17|chr7 (7056845-7057103)
               


               
               741-1104, gnl|bosTau2|chr4 (3935367-3935003)
               

               
               741-1104, gnl|Hg17|chr7 (7057088-7057444)
               

               
               741-1104, gnl|Mm7|chr6 (7829493-7829827)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               sin (0.349895)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               eep (0.122564)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.349895)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               eep (0.122564)

	219-479, gnl\|bosTau2\|chr4 (3935616-3935352)
	219-479, gnl\|Hg17\|chr7 (7056845-7057103)

	741-1104, gnl\|bosTau2\|chr4 (3935367-3935003)
	741-1104, gnl\|Hg17\|chr7 (7057088-7057444)
	741-1104, gnl\|Mm7\|chr6 (7829493-7829827)

	sin (0.349895)
	fcc (0.197785)
	rec (0.17307)
	fhi (0.169578)
	cki (0.165235)
	tbr (0.154178)
	fat (0.147427)
	liv (0.146284)
	ute (0.132784)
	bla (0.124347)
	eep (0.122564)