Non-Coding RNA Search

Ss1.1-nca10b_g7.5

Sequence:


               
               GGTGGCATGGCTGAACCGGCAAGTGGTTTTGTGACTCCCACCGGGTGGTTTCCAGCTCCA
GAGCTGACTCCCACGTTGGGGCCTCTGAGCGACCAAGCCTCGGCCTCGGAAAACTGGATG
TACTGGGCGATGCTGCCGCCTCCCCCACCACCTTCCTCGCTTCCCGCAGCAGAATCCAAG
CCTTCCTCGGAGGCGCAGCCCCCGGCGGAGGCCCAGGCTCTTCCTGAGGCGCCTCCCCCT
TTCGACGCTCAGATTCTTCCTGGGGCGCAGCCCCCCTTCCACGCCCAGTCCGCCCTTGAG
TCTCAGCCTCAATTCGATGGCCAGCCCTACTGGAATTACCAGGCTTCGACTTCATGGTAC
TGGACGCAGTCTCCTGGTATTTTTCCTCAGTATCAGAACTCCCACAACACTCCAGTTAAA
CCTTCTTATTTTCCACGAAAACACGATGCAAAAGTCAATGACTCCAACTTCTCTCCCAGG
AGAAAACAGAAAAAAAGGAAAAGGAAGGAACCAGTTTTTCACTATTTTTGTGATACCTGT
GATCGTGGTTTTAAAAATCAAGAAAAGTATGATAAACATATGTCTGAACATACAAAATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGGCATGGCTGAACCGGCAAGTGGTTTTGTGACTCCCACCGGGTGGTTTCCAGCTCCA
GAGCTGACTCCCACGTTGGGGCCTCTGAGCGACCAAGCCTCGGCCTCGGAAAACTGGATG
TACTGGGCGATGCTGCCGCCTCCCCCACCACCTTCCTCGCTTCCCGCAGCAGAATCCAAG
CCTTCCTCGGAGGCGCAGCCCCCGGCGGAGGCCCAGGCTCTTCCTGAGGCGCCTCCCCCT
TTCGACGCTCAGATTCTTCCTGGGGCGCAGCCCCCCTTCCACGCCCAGTCCGCCCTTGAG
TCTCAGCCTCAATTCGATGGCCAGCCCTACTGGAATTACCAGGCTTCGACTTCATGGTAC
TGGACGCAGTCTCCTGGTATTTTTCCTCAGTATCAGAACTCCCACAACACTCCAGTTAAA
CCTTCTTATTTTCCACGAAAACACGATGCAAAAGTCAATGACTCCAACTTCTCTCCCAGG
AGAAAACAGAAAAAAAGGAAAAGGAAGGAACCAGTTTTTCACTATTTTTGTGATACCTGT
GATCGTGGTTTTAAAAATCAAGAAAAGTATGATAAACATATGTCTGAACATACAAAATGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CV69_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CV69_MOUSE

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-418, gnl|bosTau2|chr12 (5404983-5404571)
               

               
               1-418, gnl|Hg17|chr13 (44461576-44461157)
               

               
               1-418, gnl|Mm7|chr14 (70791277-70791679)
               


               
               438-588, gnl|bosTau2|chrX (29320426-29320278)
               

               
               438-588, gnl|Hg17|chrX (43183067-43182941)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-418, gnl|bosTau2|chr12 (5404983-5404571)
               

               
               1-418, gnl|Hg17|chr13 (44461576-44461157)
               

               
               1-418, gnl|Mm7|chr14 (70791277-70791679)
               


               
               438-588, gnl|bosTau2|chrX (29320426-29320278)
               

               
               438-588, gnl|Hg17|chrX (43183067-43182941)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               elu (0.385356)
               

               
               nca (0.136874)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nca (0.136874)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	1-418, gnl\|bosTau2\|chr12 (5404983-5404571)
	1-418, gnl\|Hg17\|chr13 (44461576-44461157)
	1-418, gnl\|Mm7\|chr14 (70791277-70791679)

	438-588, gnl\|bosTau2\|chrX (29320426-29320278)
	438-588, gnl\|Hg17\|chrX (43183067-43182941)