Non-Coding RNA Search

Ss1.1-nep11c_d11.5

Sequence:


               
               AAAAATGTTCCCCTTTCAGTTGAGAAAGTTCAAGTTGAGCCACCAAAGGCTGGGGAAGTT
CGTATTAAGATGACATCTTCTGGGATCTGTGGTTCCGATGATCATGTACTGAAAGGATTA
AGCCCAATGAAATTTCCTTTAATCCCAGGCCATGAAGGAGCTGGGATTGTGGAGAGTATT
GGTGAAGGAGTGTGCTCAGTAAAACCAGGAGATAAAGTCCTCACACTCCCTCTTCCACAA
TGTAGAGAATGCAGTGCCTGCTTGCACCCCAAGGGAAACTTCTGCGAGAAGCAAGATGTT
CTACCTTCTTCTGGATTAATGCTGGATGGGACCAGCAGATTCACCTGCAGAGGAGAAAAG
ATTTATCACCTTTTCCGCACAAGCACATTTGCTGAATATACTGTTGTGCAAGAGATTGGG
GTGGCAAAAATTGATGATGCCGCTCCCATGGATAAAATCTGCATCATAAGCTGTGAGGTG
CCTACAGGCTATGGAGCTGCTGTTCACTCAGCCAAGGTCACTCCTGGTTCTACTTGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATGTTCCCCTTTCAGTTGAGAAAGTTCAAGTTGAGCCACCAAAGGCTGGGGAAGTT
CGTATTAAGATGACATCTTCTGGGATCTGTGGTTCCGATGATCATGTACTGAAAGGATTA
AGCCCAATGAAATTTCCTTTAATCCCAGGCCATGAAGGAGCTGGGATTGTGGAGAGTATT
GGTGAAGGAGTGTGCTCAGTAAAACCAGGAGATAAAGTCCTCACACTCCCTCTTCCACAA
TGTAGAGAATGCAGTGCCTGCTTGCACCCCAAGGGAAACTTCTGCGAGAAGCAAGATGTT
CTACCTTCTTCTGGATTAATGCTGGATGGGACCAGCAGATTCACCTGCAGAGGAGAAAAG
ATTTATCACCTTTTCCGCACAAGCACATTTGCTGAATATACTGTTGTGCAAGAGATTGGG
GTGGCAAAAATTGATGATGCCGCTCCCATGGATAAAATCTGCATCATAAGCTGTGAGGTG
CCTACAGGCTATGGAGCTGCTGTTCACTCAGCCAAGGTCACTCCTGGTTCTACTTGTGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61876709|ref|XP_601810.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61876709|ref|XP_601810.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               59-209, gnl|bosTau2|chr21 (36959689-36959539)
               

               
               59-209, gnl|Hg17|chr4 (100706971-100706826)
               

               
               59-209, gnl|Mm7|chr3 (138131435-138131585)
               


               
               299-518, gnl|bosTau2|chr21 (36953765-36953546)
               

               
               299-518, gnl|Hg17|chr4 (100594453-100594231)
               

               
               299-518, gnl|Mm7|chr3 (138133646-138133865)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-209, gnl|bosTau2|chr21 (36959689-36959539)
               

               
               59-209, gnl|Hg17|chr4 (100706971-100706826)
               

               
               59-209, gnl|Mm7|chr3 (138131435-138131585)
               


               
               299-518, gnl|bosTau2|chr21 (36953765-36953546)
               

               
               299-518, gnl|Hg17|chr4 (100594453-100594231)
               

               
               299-518, gnl|Mm7|chr3 (138133646-138133865)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.36785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.36785)

	59-209, gnl\|bosTau2\|chr21 (36959689-36959539)
	59-209, gnl\|Hg17\|chr4 (100706971-100706826)
	59-209, gnl\|Mm7\|chr3 (138131435-138131585)

	299-518, gnl\|bosTau2\|chr21 (36953765-36953546)
	299-518, gnl\|Hg17\|chr4 (100594453-100594231)
	299-518, gnl\|Mm7\|chr3 (138133646-138133865)