Non-Coding RNA Search

Ss1.1-nep11c_g18.5

Sequence:


               
               GTGTGTCTCTGCTCTCAGTTTCTTAATAGTGAATGCTGTTAAAAATAGGCACAAAATGGA
AGTTTCCCCAGGATGGAAAACAAAAGGGGAAGTGCTCCTGTAATTGGGAGCACAGGGGGC
CCCGCCAGAAGGACCCCCGCCTCAGCATCACTGCCTTAACCATGGCCTCCCCTCCCTCTC
TCTGGGGTGGGAGGGAGTTCCTATCCCCATCTTTGTTTTCCCTGGAGGCAGGTGTCACAA
AGCATCAGTAAACTGCTTCAGGTGCGAGAACACCACCCACTCAGGAGTGACCCCTGTTAT
CCTTTTCAATTTCCACCCACTAGCCAGTTTGCTTACACCAGGTGGTGAGGCAGCAGCTTG
GTGTTCTGACGGGCTAGCATCTTTCCCTGGTATTGTGACACCACCTCCCTTCCTTGTCCC
AAGGTTGTGAGGCCTTGTCTTTACCTTTGGTGTCACATGAGTGGAACAGGGTCCGCAAAG
CCCAGTGTGGTCATTTCCCCGACATCATTCCCTGGTGCCTGCGGGATCCTGCCGCACGCA
GGTGGGGCCAGGGGTCTTGCCAAGAACAATGTCTCCAGAAGGAAAATGGGAGCTTCTGAT
TCGAAGGCCCTGGCAGCTAGGCCTCTCTCCCAAACCACACCCTGAGGGTTAGCCCTTGGG
CCAAACCATCTGCCATGGAGTCCAGCCAAGCTTTTCTGGCTAAATAAGCAATAAGAGGCT
CTAAGCTGATTCAGTTCCTAGGACCCTTTCTGTCTTCCTTTGACTCTCCTTGTCTCCAGG
TGAAGGAAGAGCCTGTGCCACCCGCTTTCCTATTAGGCTTGTCCAAGTGTTCCAAGGGAC
TCATGTCCAGAGCCCAGGGTAATGTGGTGGGAATGTCCCCGCTGCTTCTGCATGAAGCCC
TGCTCTACAGGCCTGGTTTCTGCCAGAACCCTGCCCCCTGCCCCCTGCACTTCCTCACCA
GAAATGCCACATTCCCTCTCACTCCCTCCTCTCTTCCCCAGAGAAGCAGCTCAGCCAAAT
AAGTCTAAGCAGGGTCCATCCTTGTGGACCAGAGCCAGCCTGGAGTCATTAAGTGCTTTC
TGGTCTCCAGTTTCGGCGTGTGTTAGGGGCAGGAGGTGACTGCAAAACTTGTTCCGTAGA
GGAATCAGGCCAGACTCAATTTTGGAGGAGGGTGAGATTGAGAGGGAACCAGTTCACCCC
AGGTTCTGTTCTGGGGTTTCCCACCAACCCTTCCTGTTTGAGGCTGGTCTCTGGGAAGCA
GTAGGCCACCGTGCCTGGTCAGCCCCAATTCAAGCCATGCCAGGAATCTGCCCACCTGCC
AGGTTCAGTTCTATAAGGTGCCTCTTCAGGGACACAGTGTGTCTCTCTGATTGGGCTTCT
AAATCAAAAGCCTGATGTTCGTGTCCCTCTCATAGGGGGAGCTTTGGACACAGGACCAGT
TTGGACAGGGTCAAGGAAGAGTTTCCACTCTGCACATTGTAGAGAGGACACTCTGTAGGC
CCATGGGTCCCTTACTATAGAGGTTGAGTAAACTTGCCTTCAGTTAACCTGGGACCTCCT
GTTTATTTCTCTTTTGCCTCCCAAAGATTTTGACCATTTTATAAGTGTATGAATTCACCT
CTGTTAACAGTGGCCTAGAAGCTTCTTTGTGCTAGAAGCATGGGTAATCTAAAGGCATTC
CCGTGGAAATGGAGCTTATTCTATTTTGCTACCCTTAACCCTGTTCCTGAGGCCTCACTC
AGTAAGGCAACCCCCTTGGAAGGCTGTCCTGCATCCCAAGTCCCAGCCAGGTCAAGTGTC
TGAGGAAGGTAAGCCTGTTTGCCCCTTCAGGTCCTCAGCTGGTTACTTACCACTGTTGTC
CTTCAGTTACCTTTTTTGTAAAATGGGGTTTTAAGTTTTGTCCTTTTTTTTTTTAATGCT
GGTAAGTACTTGCATTCAAGCAGGGGAGGGGAAGCGGAGGTCTGGCCCCTACCCCATTCC
TTTAATGCTGTGGGGACCTGCCTCTTGAGCTGACCCTTCTCTTTGAGCCCCAGGAACTTC
TTTGCTTGTAGTTTCTCCAGCCTGACATGTCCCATGTCGTGCCACTTTCAAGATGCCGCT
TGGAGGGTGGGGGAGATCTACTTCCCTCTGTGACTGGGCTATGGGGTTCTGACTACCTTG
CTTACAGATTCATGGTTTGATAAATTTGTTGTATTCAAAAACTTGAAATATAGGACGCCA
TTAAGTGTCTGTTTATATTTTTGGAATATTTGTATTACTTACAATTAATTAATAAAAGTG
GGTTTAAAAAACCCATCCATGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGTCTCTGCTCTCAGTTTCTTAATAGTGAATGCTGTTAAAAATAGGCACAAAATGGA
AGTTTCCCCAGGATGGAAAACAAAAGGGGAAGTGCTCCTGTAATTGGGAGCACAGGGGGC
CCCGCCAGAAGGACCCCCGCCTCAGCATCACTGCCTTAACCATGGCCTCCCCTCCCTCTC
TCTGGGGTGGGAGGGAGTTCCTATCCCCATCTTTGTTTTCCCTGGAGGCAGGTGTCACAA
AGCATCAGTAAACTGCTTCAGGTGCGAGAACACCACCCACTCAGGAGTGACCCCTGTTAT
CCTTTTCAATTTCCACCCACTAGCCAGTTTGCTTACACCAGGTGGTGAGGCAGCAGCTTG
GTGTTCTGACGGGCTAGCATCTTTCCCTGGTATTGTGACACCACCTCCCTTCCTTGTCCC
AAGGTTGTGAGGCCTTGTCTTTACCTTTGGTGTCACATGAGTGGAACAGGGTCCGCAAAG
CCCAGTGTGGTCATTTCCCCGACATCATTCCCTGGTGCCTGCGGGATCCTGCCGCACGCA
GGTGGGGCCAGGGGTCTTGCCAAGAACAATGTCTCCAGAAGGAAAATGGGAGCTTCTGAT
TCGAAGGCCCTGGCAGCTAGGCCTCTCTCCCAAACCACACCCTGAGGGTTAGCCCTTGGG
CCAAACCATCTGCCATGGAGTCCAGCCAAGCTTTTCTGGCTAAATAAGCAATAAGAGGCT
CTAAGCTGATTCAGTTCCTAGGACCCTTTCTGTCTTCCTTTGACTCTCCTTGTCTCCAGG
TGAAGGAAGAGCCTGTGCCACCCGCTTTCCTATTAGGCTTGTCCAAGTGTTCCAAGGGAC
TCATGTCCAGAGCCCAGGGTAATGTGGTGGGAATGTCCCCGCTGCTTCTGCATGAAGCCC
TGCTCTACAGGCCTGGTTTCTGCCAGAACCCTGCCCCCTGCCCCCTGCACTTCCTCACCA
GAAATGCCACATTCCCTCTCACTCCCTCCTCTCTTCCCCAGAGAAGCAGCTCAGCCAAAT
AAGTCTAAGCAGGGTCCATCCTTGTGGACCAGAGCCAGCCTGGAGTCATTAAGTGCTTTC
TGGTCTCCAGTTTCGGCGTGTGTTAGGGGCAGGAGGTGACTGCAAAACTTGTTCCGTAGA
GGAATCAGGCCAGACTCAATTTTGGAGGAGGGTGAGATTGAGAGGGAACCAGTTCACCCC
AGGTTCTGTTCTGGGGTTTCCCACCAACCCTTCCTGTTTGAGGCTGGTCTCTGGGAAGCA
GTAGGCCACCGTGCCTGGTCAGCCCCAATTCAAGCCATGCCAGGAATCTGCCCACCTGCC
AGGTTCAGTTCTATAAGGTGCCTCTTCAGGGACACAGTGTGTCTCTCTGATTGGGCTTCT
AAATCAAAAGCCTGATGTTCGTGTCCCTCTCATAGGGGGAGCTTTGGACACAGGACCAGT
TTGGACAGGGTCAAGGAAGAGTTTCCACTCTGCACATTGTAGAGAGGACACTCTGTAGGC
CCATGGGTCCCTTACTATAGAGGTTGAGTAAACTTGCCTTCAGTTAACCTGGGACCTCCT
GTTTATTTCTCTTTTGCCTCCCAAAGATTTTGACCATTTTATAAGTGTATGAATTCACCT
CTGTTAACAGTGGCCTAGAAGCTTCTTTGTGCTAGAAGCATGGGTAATCTAAAGGCATTC
CCGTGGAAATGGAGCTTATTCTATTTTGCTACCCTTAACCCTGTTCCTGAGGCCTCACTC
AGTAAGGCAACCCCCTTGGAAGGCTGTCCTGCATCCCAAGTCCCAGCCAGGTCAAGTGTC
TGAGGAAGGTAAGCCTGTTTGCCCCTTCAGGTCCTCAGCTGGTTACTTACCACTGTTGTC
CTTCAGTTACCTTTTTTGTAAAATGGGGTTTTAAGTTTTGTCCTTTTTTTTTTTAATGCT
GGTAAGTACTTGCATTCAAGCAGGGGAGGGGAAGCGGAGGTCTGGCCCCTACCCCATTCC
TTTAATGCTGTGGGGACCTGCCTCTTGAGCTGACCCTTCTCTTTGAGCCCCAGGAACTTC
TTTGCTTGTAGTTTCTCCAGCCTGACATGTCCCATGTCGTGCCACTTTCAAGATGCCGCT
TGGAGGGTGGGGGAGATCTACTTCCCTCTGTGACTGGGCTATGGGGTTCTGACTACCTTG
CTTACAGATTCATGGTTTGATAAATTTGTTGTATTCAAAAACTTGAAATATAGGACGCCA
TTAAGTGTCTGTTTATATTTTTGGAATATTTGTATTACTTACAATTAATTAATAAAAGTG
GGTTTAAAAAACCCATCCATGAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1455-1572, + strand, RNAz p=0.874184

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1455-1572, + strand, RNAz p=0.874184

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC018922, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC018922, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1455-1813, gnl|bosTau2|chr11 (70755921-70755553)
               

               
               1455-1813, gnl|Hg17|chr12 (56500810-56500460)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1455-1813, gnl|bosTau2|chr11 (70755921-70755553)
               

               
               1455-1813, gnl|Hg17|chr12 (56500810-56500460)

Expressed library(ies): 46 entry(ies)

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Expressed library(ies): 46 entry(ies)

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               elu (1.54143)
               

               
               cki (0.660939)
               

               
               pty (0.570858)
               

               
               cmu (0.55918)
               

               
               nep (0.551775)
               

               
               nje (0.49776)
               

               
               eep (0.490256)
               

               
               lnt (0.426925)
               

               
               nlu (0.383362)
               

               
               fty (0.351679)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               fco (0.314416)
               

               
               nbm (0.297974)
               

               
               jej (0.296765)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               thg (0.253582)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 46 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (1.54143)
               

               
               cki (0.660939)
               

               
               pty (0.570858)
               

               
               cmu (0.55918)
               

               
               nep (0.551775)
               

               
               nje (0.49776)
               

               
               eep (0.490256)
               

               
               lnt (0.426925)
               

               
               nlu (0.383362)
               

               
               fty (0.351679)
               

               
               jca (0.34188)
               

               
               mcp (0.341297)
               

               
               fco (0.314416)
               

               
               nbm (0.297974)
               

               
               jej (0.296765)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               hlv (0.278513)
               

               
               ssp (0.271039)
               

               
               cov (0.264306)
               

               
               thg (0.253582)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               eje (0.197668)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	1455-1813, gnl\|bosTau2\|chr11 (70755921-70755553)
	1455-1813, gnl\|Hg17\|chr12 (56500810-56500460)

	elu (1.54143)
	cki (0.660939)
	pty (0.570858)
	cmu (0.55918)
	nep (0.551775)
	nje (0.49776)
	eep (0.490256)
	lnt (0.426925)
	nlu (0.383362)
	fty (0.351679)
	jca (0.34188)
	mcp (0.341297)
	fco (0.314416)
	nbm (0.297974)
	jej (0.296765)
	spl (0.286369)
	csk (0.281492)
	hlv (0.278513)
	ssp (0.271039)
	cov (0.264306)
	thg (0.253582)
	eru (0.240096)
	nms (0.213858)
	fcc (0.197785)
	eje (0.197668)
	sag (0.182715)
	sto (0.179824)
	gul (0.177588)
	fbs (0.175346)
	cut (0.169924)
	cje (0.165235)
	csp (0.161186)
	tbr (0.154178)
	cli (0.152812)
	cag (0.151194)
	fat (0.147427)
	cst (0.140036)
	nca (0.136874)
	nmm (0.132802)
	ute (0.132784)
	kid (0.129735)
	ova (0.129132)
	bla (0.124347)
	cly (0.120642)
	clu (0.119646)
	cty (0.10408)