Non-Coding RNA Search

Ss1.1-nep11c_h15.5

Sequence:


               
               GCGGGAGTTTTTCAAAATGGGAGCGCGAAGGCGCCACCCAGTCCTCGGAAGGTGCCTGGG
AGACCTTTCCGTGGCTGTACTGTCGTCGCCAGGAGCGGCGGCCTAGAGAGCCGAGCCTGA
TGGGCGCCAAGACCCGCTGGCTGCTTGGAGCGCTGCCTCGAAAAGACTTCGTGAAGGGAG
CTAATCCGGGAAGCACGGGCCGGGACCTAGAAATATGGCGACGTGCATCGGGGAGAAGAT
CGAGGATTTTAAAGTTGGAAATCTGCTTGGTAAAGGATCATTTGCTGGTGTCTACAGAGC
TGAGTCCATTCAGGAAGGGGATCGGGCGAAGCTAACTGCCGCGGGGCGGGCGCCGAGGTG
CTTTGGGAGGGTCCCAACCGCCGGGAGCCCGGCTGTTTAAGGGCGGAGCGGCCCGCCCCT
CACAGACGCGGGGGCGGTGAGACAGGTGTGTTGCTCGCAGCTCCGCCCTTCTGTTCCTAG
ACTCCAAGGCTTCTGGTCTGCGATCCCGCTCCAGCTGCCGCGCTTAGAGCAGAGCAAGAC
TGTCTCCCCTTTTTTCAAGGGGATGGCGGTTACCTCCGGCGGGAGCTGCGGCGGGATTCT
CTTCAGGCGCTCAGCTCTCAGGGGGTTGGCTGGAGGTGGGAGGAGGGTGCTGAGGCTACA
CTGAAGTTGCGGAGCCAGACTTAGGATATTCTATCTAGAGCCCAGCCTGGAAGCTCAGCG
AGACCTGNCAGGCATCAACATGCTTTCCACCCCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGAGTTTTTCAAAATGGGAGCGCGAAGGCGCCACCCAGTCCTCGGAAGGTGCCTGGG
AGACCTTTCCGTGGCTGTACTGTCGTCGCCAGGAGCGGCGGCCTAGAGAGCCGAGCCTGA
TGGGCGCCAAGACCCGCTGGCTGCTTGGAGCGCTGCCTCGAAAAGACTTCGTGAAGGGAG
CTAATCCGGGAAGCACGGGCCGGGACCTAGAAATATGGCGACGTGCATCGGGGAGAAGAT
CGAGGATTTTAAAGTTGGAAATCTGCTTGGTAAAGGATCATTTGCTGGTGTCTACAGAGC
TGAGTCCATTCAGGAAGGGGATCGGGCGAAGCTAACTGCCGCGGGGCGGGCGCCGAGGTG
CTTTGGGAGGGTCCCAACCGCCGGGAGCCCGGCTGTTTAAGGGCGGAGCGGCCCGCCCCT
CACAGACGCGGGGGCGGTGAGACAGGTGTGTTGCTCGCAGCTCCGCCCTTCTGTTCCTAG
ACTCCAAGGCTTCTGGTCTGCGATCCCGCTCCAGCTGCCGCGCTTAGAGCAGAGCAAGAC
TGTCTCCCCTTTTTTCAAGGGGATGGCGGTTACCTCCGGCGGGAGCTGCGGCGGGATTCT
CTTCAGGCGCTCAGCTCTCAGGGGGTTGGCTGGAGGTGGGAGGAGGGTGCTGAGGCTACA
CTGAAGTTGCGGAGCCAGACTTAGGATATTCTATCTAGAGCCCAGCCTGGAAGCTCAGCG
AGACCTGNCAGGCATCAACATGCTTTCCACCCCAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               391-602, + strand, RNAz p=0.991707

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               391-602, + strand, RNAz p=0.991707

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               548-631, + strand, RNAmicro p=0.993142

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               548-631, + strand, RNAmicro p=0.993142

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-756, gnl|bosTau2|chr17 (18597982-18598730)
               

               
               1-756, gnl|Hg17|chr4 (129159681-129160448)
               

               
               1-756, gnl|Mm7|chr3 (40566701-40567506)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr17 (18597982-18598730)
               

               
               1-756, gnl|Hg17|chr4 (129159681-129160448)
               

               
               1-756, gnl|Mm7|chr3 (40566701-40567506)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	1-756, gnl\|bosTau2\|chr17 (18597982-18598730)
	1-756, gnl\|Hg17\|chr4 (129159681-129160448)
	1-756, gnl\|Mm7\|chr3 (40566701-40567506)