Ss1.1-nep11c_i12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCAGGCTGCACTCTCAGAAATCAGTCTCAAGTGACTGGGACCCTTGCGATCAAGGGCT TACCATGCTACTCCCAAAGAGCGCCAAGGACCACTGACATTACCACTGGACGGTGATTCG TAGCTTGTATAATTACCAAAAAGAATGGACAAGCTTAATAAAATAACTGTCCCCGCCAGC CAGAAGCTGAGGCAGCTTCAAAAAATAGTTCATGACATGAAGAACAATGAAGGTGGAATA ATGAACAAGATCAAAAAGCTGAAAGTCAAAGCACCTCCAAGTGTTCCTCGAAGGGATTAT GCCTCAGAGAGCCCAGCTGACGAAGAGGAGCAGTGGTCAGATGACTTTGACAGCGATTAC GAAAATCCAGACGAGCACTCAGACTCTGAGATGTATGTGCTGCCGGCTGAGGAGGCCGGG GATGACAGCTATGAGCCGCCGCCCGCTGAACAGGAGACACGGACAGTTCACCCGGCCCTG CCCTTCACCAGAGGGGAGTACGTAGACAATCGATCAAGCCAGAGGCAGTCTCCGCCCTTC AGCAAGACCCTGCCCAGTAAACCCAGCTGGCCTTCAGGGAAAGCGAGGCTGGTCGCTCTG CCGGCCGCAGCCACTCTGCCGGCCCCAACCTCTCTGCCAAAACCTCAAGTCCCACCCAAA CCCAAAGACCTCCTGGAGGATGAGGCTGATTATGTGGTCCCTGTGGAAGATGAAGATGAA AACTATATTCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCAGGCTGCACTCTCAGAAATCAGTCTCAAGTGACTGGGACCCTTGCGATCAAGGGCT TACCATGCTACTCCCAAAGAGCGCCAAGGACCACTGACATTACCACTGGACGGTGATTCG TAGCTTGTATAATTACCAAAAAGAATGGACAAGCTTAATAAAATAACTGTCCCCGCCAGC CAGAAGCTGAGGCAGCTTCAAAAAATAGTTCATGACATGAAGAACAATGAAGGTGGAATA ATGAACAAGATCAAAAAGCTGAAAGTCAAAGCACCTCCAAGTGTTCCTCGAAGGGATTAT GCCTCAGAGAGCCCAGCTGACGAAGAGGAGCAGTGGTCAGATGACTTTGACAGCGATTAC GAAAATCCAGACGAGCACTCAGACTCTGAGATGTATGTGCTGCCGGCTGAGGAGGCCGGG GATGACAGCTATGAGCCGCCGCCCGCTGAACAGGAGACACGGACAGTTCACCCGGCCCTG CCCTTCACCAGAGGGGAGTACGTAGACAATCGATCAAGCCAGAGGCAGTCTCCGCCCTTC AGCAAGACCCTGCCCAGTAAACCCAGCTGGCCTTCAGGGAAAGCGAGGCTGGTCGCTCTG CCGGCCGCAGCCACTCTGCCGGCCCCAACCTCTCTGCCAAAACCTCAAGTCCCACCCAAA CCCAAAGACCTCCTGGAGGATGAGGCTGATTATGTGGTCCCTGTGGAAGATGAAGATGAA AACTATATTCAT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 21-163, + strand, RNAz p=0.900415 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 21-163, + strand, RNAz p=0.900415 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-192, gnl|bosTau2|chr26 (7657273-7657083) | |
| 1-192, gnl|canFam2|chr28 (12697358-12697988) | |
| 1-192, gnl|dasNov1|scaffold_85625 (40647-41339) | |
| 1-192, gnl|echTel1|scaffold_320902 (3992-4626) | |
| 1-192, gnl|hg17|chr10 (98020995-98021616) | |
| 1-192, gnl|Hg17|chr10 (98021289-98021098) | |
| 1-192, gnl|loxAfr1|scaffold_37530 (1510-2149) | |
| 1-192, gnl|mm7|chr19 (40887754-40888362) | |
| 1-192, gnl|Mm7|chr19 (40888035-40887850) | |
| 1-192, gnl|monDom2|scaffold_14 (26433166-26432526) | |
| 1-192, gnl|oryCun1|scaffold_213497 (100512-99890) | |
| 1-192, gnl|panTro1|chr8 (99711961-99712580) | |
| 1-192, gnl|rheMac2|chr9 (95808142-95808767) | |
| 1-192, gnl|rn3|chr1 (246279299-246279919) | |
| 349-505, gnl|bosTau2|chr26 (7613196-7613040) | |
| 349-505, gnl|canFam2|chr28 (12653423-12653601) | |
| 349-505, gnl|dasNov1|scaffold_71948 (7138-6960) | |
| 349-505, gnl|echTel1|scaffold_311602 (52367-52545) | |
| 349-505, gnl|hg17|chr10 (97977152-97977336) | |
| 349-505, gnl|Hg17|chr10 (97977312-97977156) | |
| 349-505, gnl|mm7|chr19 (40856180-40856358) | |
| 349-505, gnl|Mm7|chr19 (40856340-40856184) | |
| 349-505, gnl|monDom2|scaffold_14 (26504065-26503890) | |
| 349-505, gnl|panTro1|chr8 (99668642-99668826) | |
| 349-505, gnl|rheMac2|chr9 (95764225-95764409) | |
| 349-505, gnl|rn3|chr1 (246245557-246245735) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-192, gnl|bosTau2|chr26 (7657273-7657083) | |
| 1-192, gnl|canFam2|chr28 (12697358-12697988) | |
| 1-192, gnl|dasNov1|scaffold_85625 (40647-41339) | |
| 1-192, gnl|echTel1|scaffold_320902 (3992-4626) | |
| 1-192, gnl|hg17|chr10 (98020995-98021616) | |
| 1-192, gnl|Hg17|chr10 (98021289-98021098) | |
| 1-192, gnl|loxAfr1|scaffold_37530 (1510-2149) | |
| 1-192, gnl|mm7|chr19 (40887754-40888362) | |
| 1-192, gnl|Mm7|chr19 (40888035-40887850) | |
| 1-192, gnl|monDom2|scaffold_14 (26433166-26432526) | |
| 1-192, gnl|oryCun1|scaffold_213497 (100512-99890) | |
| 1-192, gnl|panTro1|chr8 (99711961-99712580) | |
| 1-192, gnl|rheMac2|chr9 (95808142-95808767) | |
| 1-192, gnl|rn3|chr1 (246279299-246279919) | |
| 349-505, gnl|bosTau2|chr26 (7613196-7613040) | |
| 349-505, gnl|canFam2|chr28 (12653423-12653601) | |
| 349-505, gnl|dasNov1|scaffold_71948 (7138-6960) | |
| 349-505, gnl|echTel1|scaffold_311602 (52367-52545) | |
| 349-505, gnl|hg17|chr10 (97977152-97977336) | |
| 349-505, gnl|Hg17|chr10 (97977312-97977156) | |
| 349-505, gnl|mm7|chr19 (40856180-40856358) | |
| 349-505, gnl|Mm7|chr19 (40856340-40856184) | |
| 349-505, gnl|monDom2|scaffold_14 (26504065-26503890) | |
| 349-505, gnl|panTro1|chr8 (99668642-99668826) | |
| 349-505, gnl|rheMac2|chr9 (95764225-95764409) | |
| 349-505, gnl|rn3|chr1 (246245557-246245735) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| cly (0.120642) |