Non-Coding RNA Search

Ss1.1-nep11c_k8.5

Sequence:


               
               CTGTGGGGGAGGGGGCTGCTGCAGCTCTGGGCATGGGGGCTGCTGCCTGAGCCACCACAG
GCGCCGCAGGTCCCACCGCAGACACCAGAGCTCTGACTGCTGCAGCCAGCCCTCGGGGGG
CTCTGGGTGCTGCGGAGGGGGAAGCGGCCAGTCCTCTGGAGGCGACTGCTGCTGCTGAAG
CGAACCCTGAACCAAGAAGAGCTGACCTGGGGGCAGCAAATGGCCAGAAACCTCCTCCTC
CTGCTCCTCTTGCTGGGCCTGCCCGGTCTGAAAATCCAGGGAAGGTTCTGCGCTCTGGGC
TGGAGTGTCCCTCTGCCTGGAGATTCAGAAGCCTGACAAACCCATCAAGAATCTATGTGC
TGACCTCTGACACTGCCCGGCTGCTCTGCCTGGAATGCCCAAACCACAGACTCGAACTCC
CTCCCCAGCTAATCCCCTTGTAGACTGCAGCCTCGAATGAAACAATAAAACAAGAAATCG
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGGGGGAGGGGGCTGCTGCAGCTCTGGGCATGGGGGCTGCTGCCTGAGCCACCACAG
GCGCCGCAGGTCCCACCGCAGACACCAGAGCTCTGACTGCTGCAGCCAGCCCTCGGGGGG
CTCTGGGTGCTGCGGAGGGGGAAGCGGCCAGTCCTCTGGAGGCGACTGCTGCTGCTGAAG
CGAACCCTGAACCAAGAAGAGCTGACCTGGGGGCAGCAAATGGCCAGAAACCTCCTCCTC
CTGCTCCTCTTGCTGGGCCTGCCCGGTCTGAAAATCCAGGGAAGGTTCTGCGCTCTGGGC
TGGAGTGTCCCTCTGCCTGGAGATTCAGAAGCCTGACAAACCCATCAAGAATCTATGTGC
TGACCTCTGACACTGCCCGGCTGCTCTGCCTGGAATGCCCAAACCACAGACTCGAACTCC
CTCCCCAGCTAATCCCCTTGTAGACTGCAGCCTCGAATGAAACAATAAAACAAGAAATCG
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5T752_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5T752_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               11-166, - strand, RNAz p=0.938064
               

               
               247-366, + strand, RNAz p=0.985217

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               11-166, - strand, RNAz p=0.938064
               

               
               247-366, + strand, RNAz p=0.985217

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               11-479, gnl|bosTau2|chr3 (14179493-14179957)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-479, gnl|bosTau2|chr3 (14179493-14179957)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.919625)
               

               
               ton (0.351)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.919625)
               

               
               ton (0.351)

	11-166, - strand, RNAz p=0.938064
	247-366, + strand, RNAz p=0.985217