Non-Coding RNA Search

Ss1.1-nep17c_h12.5

Sequence:


               
               AAGGAGAGATTCAGCAGCAGGAGGAGGCACAGCACGTGGGGCGGGGGCAGGTGGAGATGA
CACAGATGGGGCGGTAGCAAGTGGTGTGGCAGGAGACCCGGCCACAGACGGGGCGCAGGC
AGCAGCAGGGGTGGCAGCAGCTGGAGCCACAGGGGCTGGAGCCACAGCAGGAGGGCTGGC
AGCACTGGGGCCTGCAGCAGCTAGAGATGCAGCAGCGGGGCTGAGAGCAGGAGGGCTGGC
AGCACGAGGACTGGCAGCACGGGGGCCTGCAGCAGCTAGAGATGCAGCATCTGGGGCGGC
AGCAGGTGGGCTGGCAGCACACAGACTGGCAGCATTGGGGCCTGCAGCCGCTGGAGATGC
AGCATCTGGGGCGGCAGCAGGTGGACACACCGCAGCTGGGGCGGCAGCAGGTGGTCCTGC
AGCAGGTGGTCTGGCAGCAGCTGGGGCTGCAGCAGGTCTCCTGGCAGAGGTCTTGGCCAC
AGCACTGGTCAGAGCAGACGGAGCCACAACACGAGCTGACCATGGTGTCCGAGGGTGGAG
GTTCTGGCTGGGTTTCCAGAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGAGAGATTCAGCAGCAGGAGGAGGCACAGCACGTGGGGCGGGGGCAGGTGGAGATGA
CACAGATGGGGCGGTAGCAAGTGGTGTGGCAGGAGACCCGGCCACAGACGGGGCGCAGGC
AGCAGCAGGGGTGGCAGCAGCTGGAGCCACAGGGGCTGGAGCCACAGCAGGAGGGCTGGC
AGCACTGGGGCCTGCAGCAGCTAGAGATGCAGCAGCGGGGCTGAGAGCAGGAGGGCTGGC
AGCACGAGGACTGGCAGCACGGGGGCCTGCAGCAGCTAGAGATGCAGCATCTGGGGCGGC
AGCAGGTGGGCTGGCAGCACACAGACTGGCAGCATTGGGGCCTGCAGCCGCTGGAGATGC
AGCATCTGGGGCGGCAGCAGGTGGACACACCGCAGCTGGGGCGGCAGCAGGTGGTCCTGC
AGCAGGTGGTCTGGCAGCAGCTGGGGCTGCAGCAGGTCTCCTGGCAGAGGTCTTGGCCAC
AGCACTGGTCAGAGCAGACGGAGCCACAACACGAGCTGACCATGGTGTCCGAGGGTGGAG
GTTCTGGCTGGGTTTCCAGAAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               KRA48_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               KRA48_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               272-391, + strand, RNAz p=0.583607

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-391, + strand, RNAz p=0.583607

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               7-564, gnl|bosTau2|chr23 (865217-864664)
               

               
               7-564, gnl|Hg17|chr17_random (2442589-2441958)
               

               
               7-564, gnl|Mm7|chr11 (99758687-99759259)
               


               
               10-496, gnl|bosTau2|chr19 (33501872-33501373)
               

               
               10-496, gnl|Hg17|chr17 (36515800-36515298)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-564, gnl|bosTau2|chr23 (865217-864664)
               

               
               7-564, gnl|Hg17|chr17_random (2442589-2441958)
               

               
               7-564, gnl|Mm7|chr11 (99758687-99759259)
               


               
               10-496, gnl|bosTau2|chr19 (33501872-33501373)
               

               
               10-496, gnl|Hg17|chr17 (36515800-36515298)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (1.65532)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (1.65532)

	7-564, gnl\|bosTau2\|chr23 (865217-864664)
	7-564, gnl\|Hg17\|chr17_random (2442589-2441958)
	7-564, gnl\|Mm7\|chr11 (99758687-99759259)

	10-496, gnl\|bosTau2\|chr19 (33501872-33501373)
	10-496, gnl\|Hg17\|chr17 (36515800-36515298)