Non-Coding RNA Search

Ss1.1-nep34c_b22.5

Sequence:


               
               TCGGCCACTGCCCTCCGCTCACTGGCCGCGCGTCCCCGCCAGCCGAGCGTCCCCGCCGCG
CCTCCTGCCAAGGTTTCAACAGACCTCACGAAAATGCCGTCTCAAATGGAACATGCCATG
GAAACCATGATGTTCACATTTCACAAATTTGCTGGGGATAAAGGCTACCTAACAAAGGAG
GACCTGAGAGTACTCATGGAAAAGGAGTTCCCGGGATTTTTGGAAAATCAAAAAGACCCT
CTGGCTGTGGACAAAATAATGAAGGACCTGGACCAGTGCCGAGATGGGAAAGTGGGCTTC
CAGAGCTTCTTTTCGCTAATCGCTGGGCTCACCATCGCATGCAATGACTATTTTGTTGTA
CACATGAAGCAGAAGGGAAAGAAGTAGGCAGCACTGAGCAATCATGCCGCCCTGATAAGA
ATTCTCACAAAGGGTCGCTTAAGGAATCTGCCCCCCCCAGCTTCCCCCTGTATAAGGATT
TCCTGAGCAGACGGGACCCTTAGAAAAGTGTACAAAAAAACCCAACTCTGCTTTGAGAAG
CAGAGAAAGACAAGTCAATTAAGCCCAGATAAGCTTTTGATTTTTATATTGCTTGCATCC
TCTTACCCTCAATAAACAAATTTCCTTTTTTAGTTCAAAAAAAAAAAAAGAATGTTTGTT
TGCTTCTTCAGAAATGCTTGTTTCCTGCTTTGTTTTACAAAGAGCCCCCATACCCTTGGG
CATCTAGCATGAGGCGGAGCTCTTTCCACAGACCCTGCAAACTGGGAGAGCACTCTCTAC
CCAGGCTTGCAGTCTAATCTCTCGAAATTGAGCTGCCTGCCCTGTAGCTGTGTCTAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGGCCACTGCCCTCCGCTCACTGGCCGCGCGTCCCCGCCAGCCGAGCGTCCCCGCCGCG
CCTCCTGCCAAGGTTTCAACAGACCTCACGAAAATGCCGTCTCAAATGGAACATGCCATG
GAAACCATGATGTTCACATTTCACAAATTTGCTGGGGATAAAGGCTACCTAACAAAGGAG
GACCTGAGAGTACTCATGGAAAAGGAGTTCCCGGGATTTTTGGAAAATCAAAAAGACCCT
CTGGCTGTGGACAAAATAATGAAGGACCTGGACCAGTGCCGAGATGGGAAAGTGGGCTTC
CAGAGCTTCTTTTCGCTAATCGCTGGGCTCACCATCGCATGCAATGACTATTTTGTTGTA
CACATGAAGCAGAAGGGAAAGAAGTAGGCAGCACTGAGCAATCATGCCGCCCTGATAAGA
ATTCTCACAAAGGGTCGCTTAAGGAATCTGCCCCCCCCAGCTTCCCCCTGTATAAGGATT
TCCTGAGCAGACGGGACCCTTAGAAAAGTGTACAAAAAAACCCAACTCTGCTTTGAGAAG
CAGAGAAAGACAAGTCAATTAAGCCCAGATAAGCTTTTGATTTTTATATTGCTTGCATCC
TCTTACCCTCAATAAACAAATTTCCTTTTTTAGTTCAAAAAAAAAAAAAGAATGTTTGTT
TGCTTCTTCAGAAATGCTTGTTTCCTGCTTTGTTTTACAAAGAGCCCCCATACCCTTGGG
CATCTAGCATGAGGCGGAGCTCTTTCCACAGACCCTGCAAACTGGGAGAGCACTCTCTAC
CCAGGCTTGCAGTCTAATCTCTCGAAATTGAGCTGCCTGCCCTGTAGCTGTGTCTAGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38325958|gb|AAR17457.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38325958|gb|AAR17457.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               374-490, - strand, RNAz p=0.63694
               

               
               742-840, - strand, RNAz p=0.620265

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               374-490, - strand, RNAz p=0.63694
               

               
               742-840, - strand, RNAz p=0.620265

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               217-686, gnl|bosTau2|chr3 (14784201-14784664)
               

               
               217-686, gnl|Hg17|chr1 (148768885-148768420)
               

               
               217-686, gnl|Mm7|chr3 (93665950-93666405)
               


               
               709-840, gnl|bosTau2|chr3 (14784666-14784792)
               

               
               709-840, gnl|Hg17|chr1 (148768409-148768263)
               

               
               709-840, gnl|Mm7|chr3 (93666432-93666555)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               217-686, gnl|bosTau2|chr3 (14784201-14784664)
               

               
               217-686, gnl|Hg17|chr1 (148768885-148768420)
               

               
               217-686, gnl|Mm7|chr3 (93665950-93666405)
               


               
               709-840, gnl|bosTau2|chr3 (14784666-14784792)
               

               
               709-840, gnl|Hg17|chr1 (148768409-148768263)
               

               
               709-840, gnl|Mm7|chr3 (93666432-93666555)

Expressed library(ies): 62 entry(ies)

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Expressed library(ies): 62 entry(ies)

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               amn (2.08855)
               

               
               col (1.56006)
               

               
               jca (1.48148)
               

               
               fat (1.17942)
               

               
               nep (1.10355)
               

               
               nlu (0.766724)
               

               
               rec (0.692281)
               

               
               duo (0.691204)
               

               
               mcp (0.682594)
               

               
               csp (0.644745)
               

               
               eep (0.61282)
               

               
               cli (0.611247)
               

               
               eje (0.593003)
               

               
               cov (0.528611)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               cki (0.495704)
               

               
               cly (0.482567)
               

               
               ski (0.440205)
               

               
               nca (0.410621)
               

               
               che (0.408942)
               

               
               ova (0.387397)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               sag (0.36543)
               

               
               ton (0.351)
               

               
               ecc (0.345105)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 62 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (2.08855)
               

               
               col (1.56006)
               

               
               jca (1.48148)
               

               
               fat (1.17942)
               

               
               nep (1.10355)
               

               
               nlu (0.766724)
               

               
               rec (0.692281)
               

               
               duo (0.691204)
               

               
               mcp (0.682594)
               

               
               csp (0.644745)
               

               
               eep (0.61282)
               

               
               cli (0.611247)
               

               
               eje (0.593003)
               

               
               cov (0.528611)
               

               
               sin (0.524843)
               

               
               pro (0.512033)
               

               
               sug (0.509165)
               

               
               cki (0.495704)
               

               
               cly (0.482567)
               

               
               ski (0.440205)
               

               
               nca (0.410621)
               

               
               che (0.408942)
               

               
               ova (0.387397)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               sag (0.36543)
               

               
               ton (0.351)
               

               
               ecc (0.345105)
               

               
               eye (0.341006)
               

               
               spc (0.340097)
               

               
               cut (0.339847)
               

               
               vin (0.332557)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               eru (0.240096)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	374-490, - strand, RNAz p=0.63694
	742-840, - strand, RNAz p=0.620265

	217-686, gnl\|bosTau2\|chr3 (14784201-14784664)
	217-686, gnl\|Hg17\|chr1 (148768885-148768420)
	217-686, gnl\|Mm7\|chr3 (93665950-93666405)

	709-840, gnl\|bosTau2\|chr3 (14784666-14784792)
	709-840, gnl\|Hg17\|chr1 (148768409-148768263)
	709-840, gnl\|Mm7\|chr3 (93666432-93666555)

	amn (2.08855)
	col (1.56006)
	jca (1.48148)
	fat (1.17942)
	nep (1.10355)
	nlu (0.766724)
	rec (0.692281)
	duo (0.691204)
	mcp (0.682594)
	csp (0.644745)
	eep (0.61282)
	cli (0.611247)
	eje (0.593003)
	cov (0.528611)
	sin (0.524843)
	pro (0.512033)
	sug (0.509165)
	cki (0.495704)
	cly (0.482567)
	ski (0.440205)
	nca (0.410621)
	che (0.408942)
	ova (0.387397)
	elu (0.385356)
	ese (0.379507)
	sag (0.36543)
	ton (0.351)
	ecc (0.345105)
	eye (0.341006)
	spc (0.340097)
	cut (0.339847)
	vin (0.332557)
	nje (0.33184)
	nco (0.323468)
	sme (0.305437)
	jej (0.296765)
	cga (0.279096)
	hlv (0.278513)
	lyg (0.266205)
	kid (0.259471)
	ret (0.257467)
	bla (0.248694)
	eru (0.240096)
	nms (0.213858)
	hea (0.204499)
	nbm (0.198649)
	ldo (0.194005)
	mgm (0.180343)
	fty (0.17584)
	fhi (0.169578)
	cje (0.165235)
	mga (0.160205)
	tbr (0.154178)
	cag (0.151194)
	hyp (0.142837)
	pty (0.142714)
	ste (0.135208)
	nmm (0.132802)
	ute (0.132784)
	pgl (0.118483)
	med (0.116252)
	cty (0.10408)