Ss1.1-nep34c_l4.5
|
GCAGAAGAAGCCATCATTGGGACTGACGTGCTCCAGGACCACAATGCCATCCTAGACTTC
GAGCATCGCACATGCACACTAAAAGGGAAGAAGTTCCGCCTTCTGCCTGTTGGAGGGTCC
CTCGAAGATGAGTTCGACTTGGAGCTCATAGAGGAGGAGCCCTCCTCAGAGGAGGGGCGG
CAGCAGCTTTCCTGTTGAGAAGCCCCCTTTCCCCCACACCCTAAGCAGTGGCTGGAAGAC
CCACCATGGTGGAGGGGAGGGGCACATACCCATCAGGGGGTCACTGGGCTTGGCCCACCC
TCTAAAACCAACTCTTGTCCTCCTTCTCCTCCTCCTCCCTCTGCAGGGGCTTTAATCTGC
CCCTGATGGGGGAGGCTTCCACTGGAAAAGGAACAGGTGAGGGAGAGCAGGCTGGCTTTC
TTGGGAGGGGAGGAGGGTCCTCATGGTGGTCAAGCTGCTGTTGGTGGCAAAGACTCGAAG
GCCAGAAGAAGGTTCCAAGAAGCCTAGAAATGATTGTCTTTGAGAGAGGACTGGGGGACC
CCTTCATATCCCCTGAGATGTGGCTCAATCACCTTCACGCCCAGGTAACTTGTCTCAGCT
GGGCTGTGTCCTGGCTGCAGGGTCCTTACAAGCAAGACCCAGCCCTGGTGGTAAGGGTCA
CAGCTGCTCTGGGATTCTTCACTGTTGGGTCTTCCCACCTGCATGATGTATGTTTCATTC
TGGCATTTGCTTTGAAACCCATTGAGCCTTATGCCAATAATTCATTACTTCAAAACCCAA
TAAAGGCTGACTCATGGAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCAGAAGAAGCCATCATTGGGACTGACGTGCTCCAGGACCACAATGCCATCCTAGACTTC
GAGCATCGCACATGCACACTAAAAGGGAAGAAGTTCCGCCTTCTGCCTGTTGGAGGGTCC
CTCGAAGATGAGTTCGACTTGGAGCTCATAGAGGAGGAGCCCTCCTCAGAGGAGGGGCGG
CAGCAGCTTTCCTGTTGAGAAGCCCCCTTTCCCCCACACCCTAAGCAGTGGCTGGAAGAC
CCACCATGGTGGAGGGGAGGGGCACATACCCATCAGGGGGTCACTGGGCTTGGCCCACCC
TCTAAAACCAACTCTTGTCCTCCTTCTCCTCCTCCTCCCTCTGCAGGGGCTTTAATCTGC
CCCTGATGGGGGAGGCTTCCACTGGAAAAGGAACAGGTGAGGGAGAGCAGGCTGGCTTTC
TTGGGAGGGGAGGAGGGTCCTCATGGTGGTCAAGCTGCTGTTGGTGGCAAAGACTCGAAG
GCCAGAAGAAGGTTCCAAGAAGCCTAGAAATGATTGTCTTTGAGAGAGGACTGGGGGACC
CCTTCATATCCCCTGAGATGTGGCTCAATCACCTTCACGCCCAGGTAACTTGTCTCAGCT
GGGCTGTGTCCTGGCTGCAGGGTCCTTACAAGCAAGACCCAGCCCTGGTGGTAAGGGTCA
CAGCTGCTCTGGGATTCTTCACTGTTGGGTCTTCCCACCTGCATGATGTATGTTTCATTC
TGGCATTTGCTTTGAAACCCATTGAGCCTTATGCCAATAATTCATTACTTCAAAACCCAA
TAAAGGCTGACTCATGGAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
85-194, + strand, RNAmicro p=0.999844 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
85-194, + strand, RNAmicro p=0.999844 |
|
80-335, DB803451 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB803451.1|), blast E-value=0, identity=100% |
|
80-335, DB803719 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB803719.1|), blast E-value=0, identity=99.61% |
|
82-210, 602631965F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone IMAGE
(gb|BG741402.1|), blast E-value=9e-32, identity=89.15% |
|
82-210, LB02915.CR_I24 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV919283.1|),
blast E-value=9.94922e-44, identity=93.02% |
|
82-185, LB02936.CR_N21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE350669.1|),
blast E-value=6e-36, identity=94.23% |
|
82-185, LB02960.CR_G19 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE357865.1|),
blast E-value=6e-36, identity=94.23% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
80-335, DB803451 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB803451.1|), blast E-value=0, identity=100% |
|
80-335, DB803719 full-length enriched swine cDNA library, adult skin Sus
(dbj|DB803719.1|), blast E-value=0, identity=99.61% |
|
82-210, 602631965F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone IMAGE
(gb|BG741402.1|), blast E-value=9e-32, identity=89.15% |
|
82-210, LB02915.CR_I24 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV919283.1|),
blast E-value=9.94922e-44, identity=93.02% |
|
82-185, LB02936.CR_N21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE350669.1|),
blast E-value=6e-36, identity=94.23% |
|
82-185, LB02960.CR_G19 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE357865.1|),
blast E-value=6e-36, identity=94.23% |
Human gene identifier and UTR site,
human gene reading direction
|
1-335, gnl|bosTau2|chr11 (48336108-48336440) |
|
1-335, gnl|canFam2|chr10 (71743165-71743321) |
|
1-335, gnl|dasNov1|scaffold_75825 (4121-3945) |
|
1-335, gnl|hg17|chr2 (70099308-70099507) |
|
1-335, gnl|Hg17|chr2 (70099637-70099320) |
|
1-335, gnl|loxAfr1|scaffold_53574 (6688-6503) |
|
1-335, gnl|mm7|chr6 (86704393-86704220) |
|
1-335, gnl|Mm7|chr6 (86704088-86704373) |
|
1-335, gnl|monDom2|scaffold_1 (93345020-93345178) |
|
1-335, gnl|oryCun1|scaffold_211160 (1533-1371) |
|
1-335, gnl|panTro1|chr12 (72364357-72364560) |
|
1-335, gnl|rheMac2|chr13 (70221210-70221413) |
|
1-335, gnl|rn3|chr4 (121027550-121027386) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-335, gnl|bosTau2|chr11 (48336108-48336440) |
|
1-335, gnl|canFam2|chr10 (71743165-71743321) |
|
1-335, gnl|dasNov1|scaffold_75825 (4121-3945) |
|
1-335, gnl|hg17|chr2 (70099308-70099507) |
|
1-335, gnl|Hg17|chr2 (70099637-70099320) |
|
1-335, gnl|loxAfr1|scaffold_53574 (6688-6503) |
|
1-335, gnl|mm7|chr6 (86704393-86704220) |
|
1-335, gnl|Mm7|chr6 (86704088-86704373) |
|
1-335, gnl|monDom2|scaffold_1 (93345020-93345178) |
|
1-335, gnl|oryCun1|scaffold_211160 (1533-1371) |
|
1-335, gnl|panTro1|chr12 (72364357-72364560) |
|
1-335, gnl|rheMac2|chr13 (70221210-70221413) |
|
1-335, gnl|rn3|chr4 (121027550-121027386) |
|
nep (0.183925) |
|
csk (0.140746) |
|
nep (0.183925) |
|
csk (0.140746) |
