Ss1.1-pigca_1174.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGATTCTCCTATGGCTGCTGGGCTCCAGGAAGGCCCACCCCGGGGAACCCTCGGTCCCT CAACCCCTGCAAGGCTCCCAGGCCCCTCCCACACCAGAGCCACCCCTGCCTCCTTCTCCT CCAGTGGCCCCTCCTCCCGGGGCCCCAGTGACACCTCCTCCCGGTTCAACAAGGAGCAGC AAGGAACAGCCTCCCAGCTTCAGAGCTGCCCCCGAGAGGACGGCCCCGGAGGGCGGGGCT TGGCTGCCAGGCCCCTTGAAAACAGAGCAGGGGGGCCCGTGGCCCGCTCAGAGGAACCCA GTGCCCCACTGCCCGTAGCCGTGGGCACTGCAGAGCCAGGGGCCAGTATGAAGACCACGT TCACCATCGAGATCAAGGATGGCCGGGGCCAGGCCTCCACAGGCCGGGTGCTTCTGCCCA CAGGCAACCAGAGGGCAGAACTGACGCTGGGGCTGCGGGCGCCCCCCACCCTCCTTAGCA CCAGCAGTGGGGGCAAGAGCACCATCACCCATATCAGCAGCCCCGGGACTGTGGCCCGGC TGGGCACTGTCACTCACGTCACCAGCTTCAGCCATGCCTCCCCCGGTAGCCAAGGAGGCT GCAGCCTTAAGATGGAACCAGAACCAGCAGAGCCCCCCTCTGCAGCAGTGGAGGAGACCA ATGGCGCCGAGCAGACACGAGTGGACAAAGCACCAGAGAGGAGGAGCCCACTGAGAGCCG AGGAGCTGATGGCTATAGAAGATGAGGGTGTCCTGGACAAGATGCTGGATCAGACTACAG ACTTTGAGGAGCGGAAGCTCATCCGGGCCGCACTGCGTGAGCTCCGACAAAGAAAGAGAG ACCAGCGGGACAAGGAACGGGAACGGCGGCTGCAAGAGGCACGGGCCCGGCCCGGGGAGG ACCGTGGCAACACAGCCACCAAGACTACCATGCGGCACAGCCAGCAGACAGCTGACGGCT CAGCTGTCAGCACTGTCACCAAGACCGAGAGGCTCGTCCACTCCAATGATGGCACACGGA CGGCCCGCACCACCACAGTGGAGTCAAGTTTCGTGAGGCGCTCGGAGAATGGTGGTGGCA GCACTATGATGCAAACCAAGACCTTTTCCTCTTCATCATCCAAGAAGATGGGCAGTATCT TTGACCGGGAGGATGAGGCCAGCCCACGGCCTGGCAGCCTAGCGGCCCTAGAGAAACGTC AAGCTGAGAAAAAGAAAGAGCTGATGAAGGCACAGAGCCTGCCCAAGACCTCCGCCTCCC AGGCGCGGAAGGCCATGATTGAGAAGCTGGAGAAAGAAGGCGCCGCGGGCCCTGGCGGAC CCCGCGCAGCTGTGCAGCGCTCCACCAGTTTTGGGGTCCCCAACGCCAACAGCATCAAGC AGATGTTGCTGGACTGGTGCCGAGCCAAGACGCGGGGCTATGAGCATGTGGACATCCAGA ACTTCTCCTCAAGTTGGAGTGATGGGATGGCCTTCTGTGCCCTGGTGCACAACTTCTTCC CTGAGGCCTTTGACTATGGGCAGCTCAGCCCACAGAATCGGCGCCAGAACTTTGAGGTGG CCTTCTCATCTGCCGAGACCCATGCGGACTGCCCGCAGCTCCTGGACACAGAGGACATGG TGCGGCTTCGAGAGCCTGACTGGAAGTGCGTGTACACGTACATCCAGGAGTTCTACCGCT GTCTGGTCCAGAAGGGGCTGGTAAAAACCAAAAAGTCCTAACCCCTGCTTGGGGCCCCAC GGATGCTGGTGGACTGCGTGCCCCTGGTGGAGGTGGAGGACATGATGATCATGGGCAAGA AGCCCGACCCCAAATGCGTCTTCACCTATGTGCAGTCGCTATACAACCACCTGCGGCGCC ACGAGCTGCGCCTGCGCGGCAAGAATGTCTAGCTTCCCAGCCCGCACGGCTGCCCGCCCG CGGCAAGCTGCCCGCACCACACAGGCACCGTCCCCTCCCTGTGTGCCTGCCCACCGCTGC CCTGTCTGTCGCGACACCCTCCCACGCATACACGCAGCGTTTTGATAAATTATTGGTTTT CAACGAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGATTCTCCTATGGCTGCTGGGCTCCAGGAAGGCCCACCCCGGGGAACCCTCGGTCCCT CAACCCCTGCAAGGCTCCCAGGCCCCTCCCACACCAGAGCCACCCCTGCCTCCTTCTCCT CCAGTGGCCCCTCCTCCCGGGGCCCCAGTGACACCTCCTCCCGGTTCAACAAGGAGCAGC AAGGAACAGCCTCCCAGCTTCAGAGCTGCCCCCGAGAGGACGGCCCCGGAGGGCGGGGCT TGGCTGCCAGGCCCCTTGAAAACAGAGCAGGGGGGCCCGTGGCCCGCTCAGAGGAACCCA GTGCCCCACTGCCCGTAGCCGTGGGCACTGCAGAGCCAGGGGCCAGTATGAAGACCACGT TCACCATCGAGATCAAGGATGGCCGGGGCCAGGCCTCCACAGGCCGGGTGCTTCTGCCCA CAGGCAACCAGAGGGCAGAACTGACGCTGGGGCTGCGGGCGCCCCCCACCCTCCTTAGCA CCAGCAGTGGGGGCAAGAGCACCATCACCCATATCAGCAGCCCCGGGACTGTGGCCCGGC TGGGCACTGTCACTCACGTCACCAGCTTCAGCCATGCCTCCCCCGGTAGCCAAGGAGGCT GCAGCCTTAAGATGGAACCAGAACCAGCAGAGCCCCCCTCTGCAGCAGTGGAGGAGACCA ATGGCGCCGAGCAGACACGAGTGGACAAAGCACCAGAGAGGAGGAGCCCACTGAGAGCCG AGGAGCTGATGGCTATAGAAGATGAGGGTGTCCTGGACAAGATGCTGGATCAGACTACAG ACTTTGAGGAGCGGAAGCTCATCCGGGCCGCACTGCGTGAGCTCCGACAAAGAAAGAGAG ACCAGCGGGACAAGGAACGGGAACGGCGGCTGCAAGAGGCACGGGCCCGGCCCGGGGAGG ACCGTGGCAACACAGCCACCAAGACTACCATGCGGCACAGCCAGCAGACAGCTGACGGCT CAGCTGTCAGCACTGTCACCAAGACCGAGAGGCTCGTCCACTCCAATGATGGCACACGGA CGGCCCGCACCACCACAGTGGAGTCAAGTTTCGTGAGGCGCTCGGAGAATGGTGGTGGCA GCACTATGATGCAAACCAAGACCTTTTCCTCTTCATCATCCAAGAAGATGGGCAGTATCT TTGACCGGGAGGATGAGGCCAGCCCACGGCCTGGCAGCCTAGCGGCCCTAGAGAAACGTC AAGCTGAGAAAAAGAAAGAGCTGATGAAGGCACAGAGCCTGCCCAAGACCTCCGCCTCCC AGGCGCGGAAGGCCATGATTGAGAAGCTGGAGAAAGAAGGCGCCGCGGGCCCTGGCGGAC CCCGCGCAGCTGTGCAGCGCTCCACCAGTTTTGGGGTCCCCAACGCCAACAGCATCAAGC AGATGTTGCTGGACTGGTGCCGAGCCAAGACGCGGGGCTATGAGCATGTGGACATCCAGA ACTTCTCCTCAAGTTGGAGTGATGGGATGGCCTTCTGTGCCCTGGTGCACAACTTCTTCC CTGAGGCCTTTGACTATGGGCAGCTCAGCCCACAGAATCGGCGCCAGAACTTTGAGGTGG CCTTCTCATCTGCCGAGACCCATGCGGACTGCCCGCAGCTCCTGGACACAGAGGACATGG TGCGGCTTCGAGAGCCTGACTGGAAGTGCGTGTACACGTACATCCAGGAGTTCTACCGCT GTCTGGTCCAGAAGGGGCTGGTAAAAACCAAAAAGTCCTAACCCCTGCTTGGGGCCCCAC GGATGCTGGTGGACTGCGTGCCCCTGGTGGAGGTGGAGGACATGATGATCATGGGCAAGA AGCCCGACCCCAAATGCGTCTTCACCTATGTGCAGTCGCTATACAACCACCTGCGGCGCC ACGAGCTGCGCCTGCGCGGCAAGAATGTCTAGCTTCCCAGCCCGCACGGCTGCCCGCCCG CGGCAAGCTGCCCGCACCACACAGGCACCGTCCCCTCCCTGTGTGCCTGCCCACCGCTGC CCTGTCTGTCGCGACACCCTCCCACGCATACACGCAGCGTTTTGATAAATTATTGGTTTT CAACGAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 42-1577, - strand, RNAz p=0.946893 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-1577, - strand, RNAz p=0.946893 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 3-438, gnl|bosTau2|chr17 (44284096-44283688) | |
| 3-438, gnl|Hg17|chr22 (29811581-29812022) | |
| 3-438, gnl|Mm7|chr11 (3482208-3481770) | |
| 610-764, gnl|bosTau2|chr17 (44280308-44280154) | |
| 610-764, gnl|Hg17|chr22 (29815841-29815995) | |
| 610-764, gnl|Mm7|chr11 (3478485-3478331) | |
| 839-1012, gnl|bosTau2|chr17 (44278901-44278728) | |
| 839-1012, gnl|Hg17|chr22 (29817271-29817444) | |
| 839-1012, gnl|Mm7|chr11 (3477211-3477038) | |
| 1133-1309, gnl|bosTau2|chr17 (44277379-44277203) | |
| 1133-1309, gnl|Hg17|chr22 (29819204-29819380) | |
| 1133-1309, gnl|Mm7|chr11 (3474955-3474778) | |
| 1423-1577, gnl|bosTau2|chr17 (44276184-44276030) | |
| 1423-1577, gnl|canFam2|chr18 (41690844-41690678) | |
| 1423-1577, gnl|danRer3|chrUn (70832273-70832109) | |
| 1423-1577, gnl|dasNov1|scaffold_12196 (50829-50995) | |
| 1423-1577, gnl|echTel1|scaffold_260605 (2638-2476) | |
| 1423-1577, gnl|fr1|chrUn (72571553-72571712) | |
| 1423-1577, gnl|galGal2|chrUn (103662438-103662604) | |
| 1423-1577, gnl|hg17|chr11 (57070545-57070711) | |
| 1423-1577, gnl|Hg17|chr22 (29820283-29820437) | |
| 1423-1577, gnl|loxAfr1|scaffold_11027 (28190-28028) | |
| 1423-1577, gnl|Mm7|chr11 (3473973-3473819) | |
| 1423-1577, gnl|mm7|chr2 (84659169-84658999) | |
| 1423-1577, gnl|monDom2|scaffold_33 (20695155-20695319) | |
| 1423-1577, gnl|oryCun1|scaffold_199424 (44002-44165) | |
| 1423-1577, gnl|panTro1|chr9 (57979661-57979827) | |
| 1423-1577, gnl|rheMac2|chr14 (15871486-15871320) | |
| 1423-1577, gnl|rn3|chr3 (67917932-67917762) | |
| 1423-1577, gnl|tetNig1|chr4 (1450730-1450567) | |
| 1423-1577, gnl|xenTro1|scaffold_207 (1227365-1227209) | |
| 1584-1715, gnl|bosTau2|chr15 (50573158-50573027) | |
| 1584-1715, gnl|canFam2|chr18 (41686650-41686490) | |
| 1584-1715, gnl|danRer3|chrUn (70824706-70824567) | |
| 1584-1715, gnl|dasNov1|scaffold_59051 (5137-5284) | |
| 1584-1715, gnl|fr1|chrUn (72572947-72573112) | |
| 1584-1715, gnl|galGal2|chrUn (103663903-103664062) | |
| 1584-1715, gnl|hg17|chr11 (57074011-57074171) | |
| 1584-1715, gnl|Hg17|chr11 (57074024-57074155) | |
| 1584-1715, gnl|loxAfr1|scaffold_11027 (24685-24525) | |
| 1584-1715, gnl|mm7|chr2 (84655263-84655104) | |
| 1584-1715, gnl|Mm7|chr2 (84655248-84655117) | |
| 1584-1715, gnl|monDom2|scaffold_33 (20700639-20700799) | |
| 1584-1715, gnl|oryCun1|scaffold_199424 (47448-47607) | |
| 1584-1715, gnl|panTro1|chr9 (57983125-57983285) | |
| 1584-1715, gnl|rheMac2|chr14 (15867972-15867812) | |
| 1584-1715, gnl|rn3|chr3 (67914043-67913884) | |
| 1584-1715, gnl|tetNig1|chr4 (1450488-1450343) | |
| 1584-1715, gnl|xenTro1|scaffold_207 (1225288-1225129) | |
| 1741-2046, gnl|bosTau2|chr17 (44271781-44271474) | |
| 1741-2046, gnl|Hg17|chr22 (29824855-29825164) | |
| 1741-2046, gnl|Mm7|chr11 (3469831-3469525) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-438, gnl|bosTau2|chr17 (44284096-44283688) | |
| 3-438, gnl|Hg17|chr22 (29811581-29812022) | |
| 3-438, gnl|Mm7|chr11 (3482208-3481770) | |
| 610-764, gnl|bosTau2|chr17 (44280308-44280154) | |
| 610-764, gnl|Hg17|chr22 (29815841-29815995) | |
| 610-764, gnl|Mm7|chr11 (3478485-3478331) | |
| 839-1012, gnl|bosTau2|chr17 (44278901-44278728) | |
| 839-1012, gnl|Hg17|chr22 (29817271-29817444) | |
| 839-1012, gnl|Mm7|chr11 (3477211-3477038) | |
| 1133-1309, gnl|bosTau2|chr17 (44277379-44277203) | |
| 1133-1309, gnl|Hg17|chr22 (29819204-29819380) | |
| 1133-1309, gnl|Mm7|chr11 (3474955-3474778) | |
| 1423-1577, gnl|bosTau2|chr17 (44276184-44276030) | |
| 1423-1577, gnl|canFam2|chr18 (41690844-41690678) | |
| 1423-1577, gnl|danRer3|chrUn (70832273-70832109) | |
| 1423-1577, gnl|dasNov1|scaffold_12196 (50829-50995) | |
| 1423-1577, gnl|echTel1|scaffold_260605 (2638-2476) | |
| 1423-1577, gnl|fr1|chrUn (72571553-72571712) | |
| 1423-1577, gnl|galGal2|chrUn (103662438-103662604) | |
| 1423-1577, gnl|hg17|chr11 (57070545-57070711) | |
| 1423-1577, gnl|Hg17|chr22 (29820283-29820437) | |
| 1423-1577, gnl|loxAfr1|scaffold_11027 (28190-28028) | |
| 1423-1577, gnl|Mm7|chr11 (3473973-3473819) | |
| 1423-1577, gnl|mm7|chr2 (84659169-84658999) | |
| 1423-1577, gnl|monDom2|scaffold_33 (20695155-20695319) | |
| 1423-1577, gnl|oryCun1|scaffold_199424 (44002-44165) | |
| 1423-1577, gnl|panTro1|chr9 (57979661-57979827) | |
| 1423-1577, gnl|rheMac2|chr14 (15871486-15871320) | |
| 1423-1577, gnl|rn3|chr3 (67917932-67917762) | |
| 1423-1577, gnl|tetNig1|chr4 (1450730-1450567) | |
| 1423-1577, gnl|xenTro1|scaffold_207 (1227365-1227209) | |
| 1584-1715, gnl|bosTau2|chr15 (50573158-50573027) | |
| 1584-1715, gnl|canFam2|chr18 (41686650-41686490) | |
| 1584-1715, gnl|danRer3|chrUn (70824706-70824567) | |
| 1584-1715, gnl|dasNov1|scaffold_59051 (5137-5284) | |
| 1584-1715, gnl|fr1|chrUn (72572947-72573112) | |
| 1584-1715, gnl|galGal2|chrUn (103663903-103664062) | |
| 1584-1715, gnl|hg17|chr11 (57074011-57074171) | |
| 1584-1715, gnl|Hg17|chr11 (57074024-57074155) | |
| 1584-1715, gnl|loxAfr1|scaffold_11027 (24685-24525) | |
| 1584-1715, gnl|mm7|chr2 (84655263-84655104) | |
| 1584-1715, gnl|Mm7|chr2 (84655248-84655117) | |
| 1584-1715, gnl|monDom2|scaffold_33 (20700639-20700799) | |
| 1584-1715, gnl|oryCun1|scaffold_199424 (47448-47607) | |
| 1584-1715, gnl|panTro1|chr9 (57983125-57983285) | |
| 1584-1715, gnl|rheMac2|chr14 (15867972-15867812) | |
| 1584-1715, gnl|rn3|chr3 (67914043-67913884) | |
| 1584-1715, gnl|tetNig1|chr4 (1450488-1450343) | |
| 1584-1715, gnl|xenTro1|scaffold_207 (1225288-1225129) | |
| 1741-2046, gnl|bosTau2|chr17 (44271781-44271474) | |
| 1741-2046, gnl|Hg17|chr22 (29824855-29825164) | |
| 1741-2046, gnl|Mm7|chr11 (3469831-3469525) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| clu (0.717875) | |
| bla (0.621736) | |
| cut (0.509771) | |
| csp (0.322373) | |
| cst (0.280073) | |
| cov (0.264306) | |
| eep (0.245128) | |
| cly (0.241284) | |
| mas (0.210305) | |
| hea (0.204499) | |
| cki (0.165235) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.717875) | |
| bla (0.621736) | |
| cut (0.509771) | |
| csp (0.322373) | |
| cst (0.280073) | |
| cov (0.264306) | |
| eep (0.245128) | |
| cly (0.241284) | |
| mas (0.210305) | |
| hea (0.204499) | |
| cki (0.165235) | |
| cli (0.152812) | |
| eli (0.151814) | |
| cag (0.151194) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| ldo (0.0970026) |