Non-Coding RNA Search

Ss1.1-pigca_1346.5

Sequence:


               
               TCTGTAGGGTAAATTATAAGTGGGTATTTTGAGTCAGAAAATGTGCACATTTAACATTTT
GAGAAATACTGTTAGAAAAGATTGTACCATTTTACAACTCCATCAATAGTTAAGAGTGCC
TATTTGCTTACACTCCCATCTACCCTGAAACTTCCAATATTTTTGCCACTCTAATAGGCA
AAAATGTATCTTTTCTTTGTCAATAAGGAGGAACATTTTTTCTTAGGTTTATTGGCCATT
TGCATTTTCTACCGTAAATTGCATTTCCCCCCTCTTTTTTAATTGTGAAAGTGAAAATGA
CTACCATGTCATTGTATAAAAATACAAATGTAAGAATGAAGAGAGACCCTTTTCTCTAGT
ATTTACAGTCACATTCCACTGCCCACAGTTTAGTATACCTTCATTTAGTCTCCATAATTT
CCATGTGAATATACATACACATACAGATGTTTTTATATAAATAAGATCATGTATATGTAT
TGTTCTTAAGCTTGCTTTTTTTGGGGGGGGGTCTCAAGAACAATTCTTTAATGCTTGAAC
AATATTCAGTACTATGAAAATAACATATTTAACAATTCCCATATTTTTTCTTTTGCTGTT
ACATTGCCAAAGTAATACATCTCTGTGCATGTATGTGAATATTTCTTAAGGATGGAGTAG
GAAGTGGATGTGTGCTCTCTGATAGAATCCTCCTTAGCCTTCCCAAAGGACATCGTAACT
TTCTTTTTCACCAACTGTAGAAAGTGCTCATTTCCCCATATAGCCTTACCTACACTTGGT
AGTTTTTATCTGATGGGCAAAAAAGAAAAAGATCATTTTGTATTTCCCTGACTAATGGTG
AGGTTTAGGTTATTTTCATATATTTATTGGCCATTTATATTTTTATCATGGATTGTTTGG
ATCCTTTACCTGCTTTACTATTGGGTTATGTGTGGATGTATGTTGTCTTTGTTCAGCATC
TCTTTCCCCATCTTGTGATAACAGAATCCTTATTTATTGTGGGGAACCCATTCCCTGTGG
CGTAGGTGAGTATGTGACCAGGCTTGACCTTTCTGAGTCCCACAGCTCCTTACCCACAGT
GACTAAAGAATGGGCATGTAACTCAAGCCAGGCTAAAGAAAGCCCTCAACAGAACTTCTG
CTGGAACTTTTAGGAAGAAGGCTCAACAGAGATCCCATGAACAAAGGACTGTGTAAGCCT
GAATTTGTACCATGTGGAGAGAGTCTGAGGGGAAACTCAGAGGCTAGCAGAAAAAAAATG
AGAACTAAGTTCTGATGTCATTTTTCTGGAGGCCCTAGATCCAGCTGTGCCTAAAGCCTG
CCCTACCTCCGGACTTTAACGTTTTGTGAGCCAATAAAGTCCCTTTCTTGTTTAAGATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTAGGGTAAATTATAAGTGGGTATTTTGAGTCAGAAAATGTGCACATTTAACATTTT
GAGAAATACTGTTAGAAAAGATTGTACCATTTTACAACTCCATCAATAGTTAAGAGTGCC
TATTTGCTTACACTCCCATCTACCCTGAAACTTCCAATATTTTTGCCACTCTAATAGGCA
AAAATGTATCTTTTCTTTGTCAATAAGGAGGAACATTTTTTCTTAGGTTTATTGGCCATT
TGCATTTTCTACCGTAAATTGCATTTCCCCCCTCTTTTTTAATTGTGAAAGTGAAAATGA
CTACCATGTCATTGTATAAAAATACAAATGTAAGAATGAAGAGAGACCCTTTTCTCTAGT
ATTTACAGTCACATTCCACTGCCCACAGTTTAGTATACCTTCATTTAGTCTCCATAATTT
CCATGTGAATATACATACACATACAGATGTTTTTATATAAATAAGATCATGTATATGTAT
TGTTCTTAAGCTTGCTTTTTTTGGGGGGGGGTCTCAAGAACAATTCTTTAATGCTTGAAC
AATATTCAGTACTATGAAAATAACATATTTAACAATTCCCATATTTTTTCTTTTGCTGTT
ACATTGCCAAAGTAATACATCTCTGTGCATGTATGTGAATATTTCTTAAGGATGGAGTAG
GAAGTGGATGTGTGCTCTCTGATAGAATCCTCCTTAGCCTTCCCAAAGGACATCGTAACT
TTCTTTTTCACCAACTGTAGAAAGTGCTCATTTCCCCATATAGCCTTACCTACACTTGGT
AGTTTTTATCTGATGGGCAAAAAAGAAAAAGATCATTTTGTATTTCCCTGACTAATGGTG
AGGTTTAGGTTATTTTCATATATTTATTGGCCATTTATATTTTTATCATGGATTGTTTGG
ATCCTTTACCTGCTTTACTATTGGGTTATGTGTGGATGTATGTTGTCTTTGTTCAGCATC
TCTTTCCCCATCTTGTGATAACAGAATCCTTATTTATTGTGGGGAACCCATTCCCTGTGG
CGTAGGTGAGTATGTGACCAGGCTTGACCTTTCTGAGTCCCACAGCTCCTTACCCACAGT
GACTAAAGAATGGGCATGTAACTCAAGCCAGGCTAAAGAAAGCCCTCAACAGAACTTCTG
CTGGAACTTTTAGGAAGAAGGCTCAACAGAGATCCCATGAACAAAGGACTGTGTAAGCCT
GAATTTGTACCATGTGGAGAGAGTCTGAGGGGAAACTCAGAGGCTAGCAGAAAAAAAATG
AGAACTAAGTTCTGATGTCATTTTTCTGGAGGCCCTAGATCCAGCTGTGCCTAAAGCCTG
CCCTACCTCCGGACTTTAACGTTTTGTGAGCCAATAAAGTCCCTTTCTTGTTTAAGATAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               296-413, - strand, RNAz p=0.659649
               

               
               971-1129, - strand, RNAz p=0.739247
               

               
               1208-1380, - strand, RNAz p=0.965827

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               296-413, - strand, RNAz p=0.659649
               

               
               971-1129, - strand, RNAz p=0.739247
               

               
               1208-1380, - strand, RNAz p=0.965827

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1023-1140, - strand, RNAmicro p=0.999823

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1023-1140, - strand, RNAmicro p=0.999823

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-166, gnl|bosTau2|chr24 (17017143-17017311)
               

               
               1-166, gnl|Hg17|chr18 (31167735-31167578)
               

               
               1-166, gnl|Mm7|chr18 (24395663-24395519)
               


               
               191-669, gnl|bosTau2|chr24 (17017316-17017822)
               

               
               191-669, gnl|Hg17|chr18 (31167554-31167056)
               


               
               678-1380, gnl|bosTau2|chr24 (17017868-17018569)
               

               
               678-1380, gnl|Hg17|chr18 (31167029-31166322)
               

               
               678-1380, gnl|Mm7|chr18 (24395144-24394509)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-166, gnl|bosTau2|chr24 (17017143-17017311)
               

               
               1-166, gnl|Hg17|chr18 (31167735-31167578)
               

               
               1-166, gnl|Mm7|chr18 (24395663-24395519)
               


               
               191-669, gnl|bosTau2|chr24 (17017316-17017822)
               

               
               191-669, gnl|Hg17|chr18 (31167554-31167056)
               


               
               678-1380, gnl|bosTau2|chr24 (17017868-17018569)
               

               
               678-1380, gnl|Hg17|chr18 (31167029-31166322)
               

               
               678-1380, gnl|Mm7|chr18 (24395144-24394509)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               tes (0.623441)
               

               
               amn (0.417711)
               

               
               nlu (0.383362)
               

               
               vin (0.332557)
               

               
               lin (0.291206)
               

               
               clu (0.239292)
               

               
               ebs (0.236602)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)
               

               
               amn (0.417711)
               

               
               nlu (0.383362)
               

               
               vin (0.332557)
               

               
               lin (0.291206)
               

               
               clu (0.239292)
               

               
               ebs (0.236602)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	296-413, - strand, RNAz p=0.659649
	971-1129, - strand, RNAz p=0.739247
	1208-1380, - strand, RNAz p=0.965827

	1-166, gnl\|bosTau2\|chr24 (17017143-17017311)
	1-166, gnl\|Hg17\|chr18 (31167735-31167578)
	1-166, gnl\|Mm7\|chr18 (24395663-24395519)

	191-669, gnl\|bosTau2\|chr24 (17017316-17017822)
	191-669, gnl\|Hg17\|chr18 (31167554-31167056)

	678-1380, gnl\|bosTau2\|chr24 (17017868-17018569)
	678-1380, gnl\|Hg17\|chr18 (31167029-31166322)
	678-1380, gnl\|Mm7\|chr18 (24395144-24394509)

	tes (0.623441)
	amn (0.417711)
	nlu (0.383362)
	vin (0.332557)
	lin (0.291206)
	clu (0.239292)
	ebs (0.236602)
	aor (0.195274)
	ldo (0.194005)
	fty (0.17584)
	nco (0.161734)
	tbr (0.154178)
	spl (0.143184)
	ste (0.135208)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	cty (0.10408)
	nbm (0.0993246)
	jej (0.0989218)