Non-Coding RNA Search

Ss1.1-pigcb_1029.5

Sequence:


               
               CTAAAATAAAGACACCTTTGGAAGATGATGAGCTTACTTCCATGTCTTGCCATCCACCTT
TGGTCGACATCTTCTAGTTAGTTAGAGCTGCCATCCCTGGGGGTACCCTGATGATGCCTA
TAAAGGACGCCCATTCTGTCCTAGGCTGACTTCTTCTCTCTCCTGAATTTGAATCCTTTT
ACTTTTTCCTGTTAAACCACCAAATGTCGGCAAGCTGTGCGGGACATGAGTCTTTGTTTA
AACCTTGCTTAGCGCCTCCTGGAGAAACGTGGATTTGGTGGGAAGGGCACAGGAAGGCCG
ACGGACCGCAGACCACAATGGTGCCACGCTGCTCCAACCCACAGCTCCATCCCTTGCTTC
TGACAATGTGGTCCCTACTGTCAGATGGCGTGTGGGGCGGGAAGGGTTGTTTTTTTAAAA
ACTCGTTTTTATGAGCAGGATATCTTGATCAATAGCAAACTTTTTTTAATGGATTAGTGA
AATAAATGTCCCCATGAATCATTTATAAAGTCCGTTTCTTTCACTGTGTGGAATTAAGAT
AAGACTGACAGCGCTGGCAGTTTCTCTTAGCTGCTGAGCCCATCGCTGCACCTTGCTCAA
GCTGCTGAGTGAATTTGCCACCAGCTAGTTTCTCTTCCTTGGTTTGTCTCCACTTTTTAT
CTGTTGGTTATTGGCTTTCTTTTCCATTCTGTATTTTCTATCTGACTCTGTGTACTGTAT
AAAGCTGTTTTTTTCCTTGTCTGTTTATCTTTCTTTGACTGGAATATTTACAATAAAACA
GAAACAAACCCTGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAAATAAAGACACCTTTGGAAGATGATGAGCTTACTTCCATGTCTTGCCATCCACCTT
TGGTCGACATCTTCTAGTTAGTTAGAGCTGCCATCCCTGGGGGTACCCTGATGATGCCTA
TAAAGGACGCCCATTCTGTCCTAGGCTGACTTCTTCTCTCTCCTGAATTTGAATCCTTTT
ACTTTTTCCTGTTAAACCACCAAATGTCGGCAAGCTGTGCGGGACATGAGTCTTTGTTTA
AACCTTGCTTAGCGCCTCCTGGAGAAACGTGGATTTGGTGGGAAGGGCACAGGAAGGCCG
ACGGACCGCAGACCACAATGGTGCCACGCTGCTCCAACCCACAGCTCCATCCCTTGCTTC
TGACAATGTGGTCCCTACTGTCAGATGGCGTGTGGGGCGGGAAGGGTTGTTTTTTTAAAA
ACTCGTTTTTATGAGCAGGATATCTTGATCAATAGCAAACTTTTTTTAATGGATTAGTGA
AATAAATGTCCCCATGAATCATTTATAAAGTCCGTTTCTTTCACTGTGTGGAATTAAGAT
AAGACTGACAGCGCTGGCAGTTTCTCTTAGCTGCTGAGCCCATCGCTGCACCTTGCTCAA
GCTGCTGAGTGAATTTGCCACCAGCTAGTTTCTCTTCCTTGGTTTGTCTCCACTTTTTAT
CTGTTGGTTATTGGCTTTCTTTTCCATTCTGTATTTTCTATCTGACTCTGTGTACTGTAT
AAAGCTGTTTTTTTCCTTGTCTGTTTATCTTTCTTTGACTGGAATATTTACAATAAAACA
GAAACAAACCCTGAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-796, gnl|bosTau2|chr15 (16255405-16256213)
               

               
               1-796, gnl|Hg17|chr11 (120363913-120364724)
               

               
               1-796, gnl|Mm7|chr9 (42453407-42452510)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-796, gnl|bosTau2|chr15 (16255405-16256213)
               

               
               1-796, gnl|Hg17|chr11 (120363913-120364724)
               

               
               1-796, gnl|Mm7|chr9 (42453407-42452510)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.20816)
               

               
               fbs (0.175346)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               fbs (0.175346)

	1-796, gnl\|bosTau2\|chr15 (16255405-16256213)
	1-796, gnl\|Hg17\|chr11 (120363913-120364724)
	1-796, gnl\|Mm7\|chr9 (42453407-42452510)