Non-Coding RNA Search

Ss1.1-pigcb_1196.5

Sequence:


               
               TGCTATTTTACTTACCATTACCACTTACAATTGATGGAATACTATATTAGTACAAACATG
GCATCAAAACTTGTGTTAAAATACTAACTAGACTGTAGCTGCAGTGCAGACGCCTTAGAA
TCCATACAAATTAAATATTACACAATTAATGAATAGTAGCCAAGAAAAATGTTTTTCTTG
CACTGTTACTCTGAAGATGGGGTGCATGTCATTTGGTGTGTGGTGTAACTAGACAGAACT
GCGTGTCACGCATTGGCGTTACAAGGTCCTCCTCTGTTGCCAGCTTCTGGTAATGAAGAC
TTTCTCCAGTTTCTGACATAAATACATGAAATCATCTTTTTTTAGAAAAAATTGGTTGGG
GAGGAGGTGTTGTAATCCAGTTCTGAACTGTCCATTTGCTTCATATAAAGGCTTCGGTGT
CCATATTTGCCCACTCGATAAACATTTTCATGATATAGACTAATGCCTGCATAGAATAAA
AATTAAGTATGCAAGAGCCTTAAAGTGAACTAAATGAAACTGTTGACTGCCTTAACGATG
ACCAGCTCTCCACACGGGCATACTACTCCTTTGCATAGGGTCTGTTCATTAAGTAATGCC
TTAATAGTGCCAGGGTTTCTGAAGCATAGACTCAAAGGGACTTTTATATAAAGGACAGAA
ATTTGACTATTAAGTATTAAAGCCTGATTGTACATCAGTAGTTGAAGCACCCACTATCGG
GATAATCTAGGCACACTGATGCGTTACACACAGGTGACTTGCTAACCTCAGTACTGTTTT
GTGGTAGTTCAGGTTTTTACTGTTTTGTATAACAGATTATCCAAGAAGCTGGACTTTATG
TAATAGGATCTTCAAGGACCAAGTTGCATATTTAAACGCTATAAGCGAAAAAGTACAGAT
TTACAGAAATGTACCAATCAAAAATGATTCCTTTTTTACGGGAATTTTTCGAGAGAAGAG
GCAAAAATTTTGTTTAAAGCCTACAAGCAAATTCATTCAAAGAACTGAATACAGCTGTAG
AACATTGTGACTATTGCAATAAGAAGTATCCAGGCCAGTGATGTTTAATTATATGAACGT
TTTTACATTCACTATGCCTTTCAAAGCAGGGATATTTTATAAAACTGAGAGAAAACTTTA
AATCGTCAAGCTGGTGCTTTAAAGTACATAAAGTCTGATCTGTAACAAGCTCCATTTCAA
AGGGAAAGACCTTGAAAGGAGAGGCAGGGGGCTTCCTAAGTCTGTTGATGAACTCACTGA
TGCTTTGAGTCTTCCAAGTTCACTGTAAATAACATACCTAACAATGTAATGTTGCTGTTT
TCTAACAGAAGATGGACGAAATGATAATGTATGGAATTTATTTCATTACACAACAGTTTT
CACTGATACTGTGAAATCTGGACTCTCCTTTCCAGCCCTGCCAAACCCCATACTGAACAA
ATCATTCTGGACACAGAGGGCGGGTAGGCCCTGTGCGAACTGTTCTGGTCACTTATATTC
TTGTAGAAACTGGTAGATGTACCAAATAAATTCTATGCACATCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTATTTTACTTACCATTACCACTTACAATTGATGGAATACTATATTAGTACAAACATG
GCATCAAAACTTGTGTTAAAATACTAACTAGACTGTAGCTGCAGTGCAGACGCCTTAGAA
TCCATACAAATTAAATATTACACAATTAATGAATAGTAGCCAAGAAAAATGTTTTTCTTG
CACTGTTACTCTGAAGATGGGGTGCATGTCATTTGGTGTGTGGTGTAACTAGACAGAACT
GCGTGTCACGCATTGGCGTTACAAGGTCCTCCTCTGTTGCCAGCTTCTGGTAATGAAGAC
TTTCTCCAGTTTCTGACATAAATACATGAAATCATCTTTTTTTAGAAAAAATTGGTTGGG
GAGGAGGTGTTGTAATCCAGTTCTGAACTGTCCATTTGCTTCATATAAAGGCTTCGGTGT
CCATATTTGCCCACTCGATAAACATTTTCATGATATAGACTAATGCCTGCATAGAATAAA
AATTAAGTATGCAAGAGCCTTAAAGTGAACTAAATGAAACTGTTGACTGCCTTAACGATG
ACCAGCTCTCCACACGGGCATACTACTCCTTTGCATAGGGTCTGTTCATTAAGTAATGCC
TTAATAGTGCCAGGGTTTCTGAAGCATAGACTCAAAGGGACTTTTATATAAAGGACAGAA
ATTTGACTATTAAGTATTAAAGCCTGATTGTACATCAGTAGTTGAAGCACCCACTATCGG
GATAATCTAGGCACACTGATGCGTTACACACAGGTGACTTGCTAACCTCAGTACTGTTTT
GTGGTAGTTCAGGTTTTTACTGTTTTGTATAACAGATTATCCAAGAAGCTGGACTTTATG
TAATAGGATCTTCAAGGACCAAGTTGCATATTTAAACGCTATAAGCGAAAAAGTACAGAT
TTACAGAAATGTACCAATCAAAAATGATTCCTTTTTTACGGGAATTTTTCGAGAGAAGAG
GCAAAAATTTTGTTTAAAGCCTACAAGCAAATTCATTCAAAGAACTGAATACAGCTGTAG
AACATTGTGACTATTGCAATAAGAAGTATCCAGGCCAGTGATGTTTAATTATATGAACGT
TTTTACATTCACTATGCCTTTCAAAGCAGGGATATTTTATAAAACTGAGAGAAAACTTTA
AATCGTCAAGCTGGTGCTTTAAAGTACATAAAGTCTGATCTGTAACAAGCTCCATTTCAA
AGGGAAAGACCTTGAAAGGAGAGGCAGGGGGCTTCCTAAGTCTGTTGATGAACTCACTGA
TGCTTTGAGTCTTCCAAGTTCACTGTAAATAACATACCTAACAATGTAATGTTGCTGTTT
TCTAACAGAAGATGGACGAAATGATAATGTATGGAATTTATTTCATTACACAACAGTTTT
CACTGATACTGTGAAATCTGGACTCTCCTTTCCAGCCCTGCCAAACCCCATACTGAACAA
ATCATTCTGGACACAGAGGGCGGGTAGGCCCTGTGCGAACTGTTCTGGTCACTTATATTC
TTGTAGAAACTGGTAGATGTACCAAATAAATTCTATGCACATCAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-1545, gnl|bosTau2|chr16 (4738689-4737160)
               

               
               1-1545, gnl|Hg17|chr1 (189791045-189792567)
               

               
               1-1545, gnl|Mm7|chr1 (143678827-143677072)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1545, gnl|bosTau2|chr16 (4738689-4737160)
               

               
               1-1545, gnl|Hg17|chr1 (189791045-189792567)
               

               
               1-1545, gnl|Mm7|chr1 (143678827-143677072)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               clu (0.957167)
               

               
               gul (0.355177)
               

               
               liv (0.292569)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.957167)
               

               
               gul (0.355177)
               

               
               liv (0.292569)
               

               
               sug (0.254582)
               

               
               thg (0.253582)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	1-1545, gnl\|bosTau2\|chr16 (4738689-4737160)
	1-1545, gnl\|Hg17\|chr1 (189791045-189792567)
	1-1545, gnl\|Mm7\|chr1 (143678827-143677072)

	clu (0.957167)
	gul (0.355177)
	liv (0.292569)
	sug (0.254582)
	thg (0.253582)
	nms (0.213858)
	cty (0.20816)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	sag (0.182715)
	mgm (0.180343)
	fbs (0.175346)
	mcp (0.170648)
	mga (0.160205)
	ski (0.146735)
	lin (0.145603)
	spl (0.143184)
	nca (0.136874)
	ute (0.132784)
	kid (0.129735)
	ret (0.128733)
	ese (0.126502)
	spc (0.113366)
	nbm (0.0993246)