Non-Coding RNA Search

Ss1.1-pigcb_1823.5

Sequence:


               
               GTCTAGCTGAAGGACAAAAATGCCAAGGATTAAGAGAAGGCACTTCAGGAATACGTTCCA
ACTTTATAATGACGGAGCATAGTCCTGCCTAGTTAAATCGGTGCCTTTCCAACCACCACT
TTGTATGCCCGAGACATCTGAGTCCATTTTTCACAGCAAAGTTTCAGCAAACTCTAGGGT
AAAAATAAGTCCAATAAGCCATAAAAAGGAGTGAAATAGTGCCATCTGCAGCAACATGGA
TGGACCTAGAGATAGTCGTCTTGGGTGAAGTAAGTCAGACAGAGAAAGACGGGTATTATG
TGAGATCACTCATGTGTGGAGTCTAATAAAAAAAGACACAAAGAGACTTATTCGCAGGAC
AGAAACAGTCTCAGCGATTTCAAGACCAGACTTATGGTTATGCAAGAGGAAATGCTGGGT
GGAGGGATGCATTGGGAGGCTGGGATTGGCATGTACACACAACTATATACAAAATCGATT
GGTAACAGGGACCTGCTGTATAGCTTGGGGAAATCCATTCAGTGCTCTGTGATGGCCTAT
ATGGGGAAAGAATCTGAAAAGGAATGGATATATACATATGGGTGTGGCTGATTTGCTTTG
GTGTACACCTGAAACTAACACAGCATTGTGGGTCACCTATACTCCAATAAAATTTATTTC
AAAAAATATAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTAGCTGAAGGACAAAAATGCCAAGGATTAAGAGAAGGCACTTCAGGAATACGTTCCA
ACTTTATAATGACGGAGCATAGTCCTGCCTAGTTAAATCGGTGCCTTTCCAACCACCACT
TTGTATGCCCGAGACATCTGAGTCCATTTTTCACAGCAAAGTTTCAGCAAACTCTAGGGT
AAAAATAAGTCCAATAAGCCATAAAAAGGAGTGAAATAGTGCCATCTGCAGCAACATGGA
TGGACCTAGAGATAGTCGTCTTGGGTGAAGTAAGTCAGACAGAGAAAGACGGGTATTATG
TGAGATCACTCATGTGTGGAGTCTAATAAAAAAAGACACAAAGAGACTTATTCGCAGGAC
AGAAACAGTCTCAGCGATTTCAAGACCAGACTTATGGTTATGCAAGAGGAAATGCTGGGT
GGAGGGATGCATTGGGAGGCTGGGATTGGCATGTACACACAACTATATACAAAATCGATT
GGTAACAGGGACCTGCTGTATAGCTTGGGGAAATCCATTCAGTGCTCTGTGATGGCCTAT
ATGGGGAAAGAATCTGAAAAGGAATGGATATATACATATGGGTGTGGCTGATTTGCTTTG
GTGTACACCTGAAACTAACACAGCATTGTGGGTCACCTATACTCCAATAAAATTTATTTC
AAAAAATATAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               181-677, gnl|bosTau2|chr10 (24561270-24560788)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               181-677, gnl|bosTau2|chr10 (24561270-24560788)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               csk (0.281492)
               

               
               sug (0.254582)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)
               

               
               sug (0.254582)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               ill (0.175593)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	csk (0.281492)
	sug (0.254582)
	nep (0.183925)
	sag (0.182715)
	ill (0.175593)
	fat (0.147427)
	liv (0.146284)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)