Non-Coding RNA Search

Ss1.1-plac_0120.5

Sequence:


               
               CCCAAGATGAGCAACCACAACCCAAGATGCTAGCCACATCTACCTTATAAGGTAGTGGTA
AGGACTGAGTAAGACAGGCATGTAAAGCTCAAGGCACATGCTAAGTGCTTAGTAAGTGGG
GGATGTCATAATTGTCTATTATCCACAACCCAGGGAAATTACAGCTCAGAGAGAGCAAGG
AACTGGCTTTAGGTCACACAGGGAATCAGGCACTGATTGCAGGTCTTGGAAGTTGTGAGG
AGGGAGTCTTGAGGGTCTCCCAGGGACCCCTCCTCTGATGGGGCTCTCATTCCTTCTAGG
CCTCCCCAAACCTCCCGCTGAGCTAGAGCCTGAGCCAGAGCTGGAGGGGCTGCTGACACC
AGTGCTAGAGGCTAGTGATGCAGATGAAGGCGCTGTCACTCGGCCCCTTAGTCCCACGCG
GCTGCAGCCAGCACTGCCACCCGAGGCACAGTCAGTGCCTGAGCTGGAGGAAGTGGCGCG
GGTGCTGGCAGAGATTCCTCGGCCCCTCAAACGCAGAGGCTCCATGGAGCAGAGCCCCGC
TGTGGCCCTGCCTCCCACCCACAAGAAGCAGTACCAGCAGATCATCAGCCGCCTCTTCCA
TCGACATGGGGGACCTGGGGGGCCTGAGCCTGAGCTCTCCCCCATCACTGAGGGATCTGA
GGCCAGGGCAGGGCCCCCTGCTCCTGCCCCACCAGCTCCTGTACCAGCCCCAGCTCCGCT
CCAGAGCAGCCCACCAGAGCAGCCACAGAGCATGGAGATGCGCTCCGTGCTGCGGAAAGC
CGGTTCCCCGCGCAAGGTCCGCCGCGCGCGCCTCAATCCACTTGTGCTGCTGCTGGACGC
TGCGCTGACCGGGGAGCTGGACGTGGTGCAGCAGGCGGTGAAGGAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAAGATGAGCAACCACAACCCAAGATGCTAGCCACATCTACCTTATAAGGTAGTGGTA
AGGACTGAGTAAGACAGGCATGTAAAGCTCAAGGCACATGCTAAGTGCTTAGTAAGTGGG
GGATGTCATAATTGTCTATTATCCACAACCCAGGGAAATTACAGCTCAGAGAGAGCAAGG
AACTGGCTTTAGGTCACACAGGGAATCAGGCACTGATTGCAGGTCTTGGAAGTTGTGAGG
AGGGAGTCTTGAGGGTCTCCCAGGGACCCCTCCTCTGATGGGGCTCTCATTCCTTCTAGG
CCTCCCCAAACCTCCCGCTGAGCTAGAGCCTGAGCCAGAGCTGGAGGGGCTGCTGACACC
AGTGCTAGAGGCTAGTGATGCAGATGAAGGCGCTGTCACTCGGCCCCTTAGTCCCACGCG
GCTGCAGCCAGCACTGCCACCCGAGGCACAGTCAGTGCCTGAGCTGGAGGAAGTGGCGCG
GGTGCTGGCAGAGATTCCTCGGCCCCTCAAACGCAGAGGCTCCATGGAGCAGAGCCCCGC
TGTGGCCCTGCCTCCCACCCACAAGAAGCAGTACCAGCAGATCATCAGCCGCCTCTTCCA
TCGACATGGGGGACCTGGGGGGCCTGAGCCTGAGCTCTCCCCCATCACTGAGGGATCTGA
GGCCAGGGCAGGGCCCCCTGCTCCTGCCCCACCAGCTCCTGTACCAGCCCCAGCTCCGCT
CCAGAGCAGCCCACCAGAGCAGCCACAGAGCATGGAGATGCGCTCCGTGCTGCGGAAAGC
CGGTTCCCCGCGCAAGGTCCGCCGCGCGCGCCTCAATCCACTTGTGCTGCTGCTGGACGC
TGCGCTGACCGGGGAGCTGGACGTGGTGCAGCAGGCGGTGAAGGAGGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               IASPP_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               IASPP_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               605-755, - strand, RNAz p=0.992685

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               605-755, - strand, RNAz p=0.992685

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-755, gnl|bosTau2|chr18 (38487568-38488298)
               

               
               25-755, gnl|Hg17|chr19 (50587711-50586977)
               

               
               25-755, gnl|Mm7|chr7 (17054977-17055759)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-755, gnl|bosTau2|chr18 (38487568-38488298)
               

               
               25-755, gnl|Hg17|chr19 (50587711-50586977)
               

               
               25-755, gnl|Mm7|chr7 (17054977-17055759)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               pla (0.133672)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	25-755, gnl\|bosTau2\|chr18 (38487568-38488298)
	25-755, gnl\|Hg17\|chr19 (50587711-50586977)
	25-755, gnl\|Mm7\|chr7 (17054977-17055759)