Non-Coding RNA Search

Ss1.1-ramn3502b_p8.5

Sequence:


               
               CACTGTCAGAGGCTGTGCAACCCCTTCATGGTGCCAAGGCCTCCACGTGGCTGAAGCCTT
CAGCCTGACCCAAGCGGCCGCCCGCTGCTGTACTGGAAATAGCTGTAACCAGCCAGCCCT
GGATGTCAGGCCCCGCACTGGGGGCGCAACGCGGCCTGACCCTGCCTACTTCAGCTTCTT
TGTCACCCTGCTTATGACTGCCAGACTGTGGGGAGGCACCCTCCTCTGGACCTGAACCTC
ACACTCCCACTGCCCTGGCTGGATCCAGGGGACCCCTTCGCCCTTCCCTCAGCTCCAGCC
CTGCCGACTTGCTGTGTGACCTCAGGCCAGTGTGCTGCCCTCTCTGAGCCTCCGTGTACC
CAGCTGTCAGAATGCTTATCTCAGAGGAGACTTGTGAGAAGCAGAGGAGAAAAGCCAAAC
AAAGGCTGCGGGCCAGCAGGCTAGAGCTCTTGTTATGATGAATATTGTTGCCGCTATTAT
TGTTATTATTAATTATTTGTTTTATTTAATATTTTATATGGAAATAAAGATTTTTCTACC
AGTGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTGTCAGAGGCTGTGCAACCCCTTCATGGTGCCAAGGCCTCCACGTGGCTGAAGCCTT
CAGCCTGACCCAAGCGGCCGCCCGCTGCTGTACTGGAAATAGCTGTAACCAGCCAGCCCT
GGATGTCAGGCCCCGCACTGGGGGCGCAACGCGGCCTGACCCTGCCTACTTCAGCTTCTT
TGTCACCCTGCTTATGACTGCCAGACTGTGGGGAGGCACCCTCCTCTGGACCTGAACCTC
ACACTCCCACTGCCCTGGCTGGATCCAGGGGACCCCTTCGCCCTTCCCTCAGCTCCAGCC
CTGCCGACTTGCTGTGTGACCTCAGGCCAGTGTGCTGCCCTCTCTGAGCCTCCGTGTACC
CAGCTGTCAGAATGCTTATCTCAGAGGAGACTTGTGAGAAGCAGAGGAGAAAAGCCAAAC
AAAGGCTGCGGGCCAGCAGGCTAGAGCTCTTGTTATGATGAATATTGTTGCCGCTATTAT
TGTTATTATTAATTATTTGTTTTATTTAATATTTTATATGGAAATAAAGATTTTTCTACC
AGTGAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|6970099|gb|AAF34192.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|6970099|gb|AAF34192.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               197-312, - strand, RNAz p=0.617906

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-312, - strand, RNAz p=0.617906

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-549, gnl|bosTau2|chr18 (46188621-46189157)
               

               
               1-549, gnl|Hg17|chr19 (48845116-48844568)
               

               
               1-549, gnl|Mm7|chr7 (21263195-21263673)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-549, gnl|bosTau2|chr18 (46188621-46189157)
               

               
               1-549, gnl|Hg17|chr19 (48845116-48844568)
               

               
               1-549, gnl|Mm7|chr7 (21263195-21263673)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               nms (0.213858)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nms (0.213858)

	1-549, gnl\|bosTau2\|chr18 (46188621-46189157)
	1-549, gnl\|Hg17\|chr19 (48845116-48844568)
	1-549, gnl\|Mm7\|chr7 (21263195-21263673)