Non-Coding RNA Search

Ss1.1-ramn3505b_k24.5

Sequence:


               
               AGGGGCGCGCGGGGCAGCCGAGGTTTGCGCCCCGCGTGTCGGAGCGGTCCACCTCCCCGC
CCCTGCAACCCGGCTCTCCTCCGCTGTCCTGCTCCAGCGCCCCACCCCGCCCCCATGGCT
TCTCCGGACGACCCTCTGCGCGCAGATCACTTGGCAAAGGAGCCAGTGGAAGACACAGAC
CCCAGCACTATATCCCTTAACATGTCAGACAAATATCCCATTCAAGATACAGGACTCCCT
AAAGCTGAGGAGTGTGATCCGGTTGCTTTGAACTGCCCGACCAATTCAGATATGCAGCAC
CAGGGAGAAGAAAATGGCTTTCCAGACAGTACTAGAGATCCCCTTTCAGATCTAAGCAAG
GTCGAGCCCTGCGCCAAGAAGTGTACCTGTTCCTCCTGCTCGCTCCGGGCCCCTACCATC
AGCGACTTGCTCAACGACCAGGACTTACTAGACGTGATCAGGATAAAGCTGGATCCCTGT
CACCCGACGGTCAAAAACTGGAGGAATTTTGCAAGCAAGTGGGGCATGCCCTACGATGAA
CTGTGCTTCCTGGAGCAGCGGCCGCAGAGCCCCACCCTGGAGTTCCTGCTCCGGAACAGC
CAGAGGACGGTGGGCCAGCTCATGGAGCTCTGCAGGCTCTACCACAGGGCCGACGTGGAG
AAGGTCCTGCGCAGGTGGGTGGACGAGGAGTGGCCCAAGAGGAGCCGTGAAGACCACCCC
CGGAACGTCTAGACCCCGGCTCCTTCTTGTTGGCCTCCCCGGACTTTGAAACAAGCCCAG
GTTAAGGAGTGACTTGAATCTGTTCTTTTTTAAGTTTAGGGTGAGCATGTGGAACAGTGG
ACCTTGGTTTTCCCCACACCTGGTGCTTTTGTGGAGGGATGGGGTGTGTTCTGGGTGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGCGCGCGGGGCAGCCGAGGTTTGCGCCCCGCGTGTCGGAGCGGTCCACCTCCCCGC
CCCTGCAACCCGGCTCTCCTCCGCTGTCCTGCTCCAGCGCCCCACCCCGCCCCCATGGCT
TCTCCGGACGACCCTCTGCGCGCAGATCACTTGGCAAAGGAGCCAGTGGAAGACACAGAC
CCCAGCACTATATCCCTTAACATGTCAGACAAATATCCCATTCAAGATACAGGACTCCCT
AAAGCTGAGGAGTGTGATCCGGTTGCTTTGAACTGCCCGACCAATTCAGATATGCAGCAC
CAGGGAGAAGAAAATGGCTTTCCAGACAGTACTAGAGATCCCCTTTCAGATCTAAGCAAG
GTCGAGCCCTGCGCCAAGAAGTGTACCTGTTCCTCCTGCTCGCTCCGGGCCCCTACCATC
AGCGACTTGCTCAACGACCAGGACTTACTAGACGTGATCAGGATAAAGCTGGATCCCTGT
CACCCGACGGTCAAAAACTGGAGGAATTTTGCAAGCAAGTGGGGCATGCCCTACGATGAA
CTGTGCTTCCTGGAGCAGCGGCCGCAGAGCCCCACCCTGGAGTTCCTGCTCCGGAACAGC
CAGAGGACGGTGGGCCAGCTCATGGAGCTCTGCAGGCTCTACCACAGGGCCGACGTGGAG
AAGGTCCTGCGCAGGTGGGTGGACGAGGAGTGGCCCAAGAGGAGCCGTGAAGACCACCCC
CGGAACGTCTAGACCCCGGCTCCTTCTTGTTGGCCTCCCCGGACTTTGAAACAAGCCCAG
GTTAAGGAGTGACTTGAATCTGTTCTTTTTTAAGTTTAGGGTGAGCATGTGGAACAGTGG
ACCTTGGTTTTCCCCACACCTGGTGCTTTTGTGGAGGGATGGGGTGTGTTCTGGGTGGCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|56204335|emb|CAI22303.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|56204335|emb|CAI22303.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               541-660, + strand, RNAz p=0.529043

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               541-660, + strand, RNAz p=0.529043

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               342-811, gnl|bosTau2|chr28 (4658240-4658708)
               

               
               342-811, gnl|Hg17|chr1 (232971600-232972071)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               342-811, gnl|bosTau2|chr28 (4658240-4658708)
               

               
               342-811, gnl|Hg17|chr1 (232971600-232972071)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cty (0.10408)

	342-811, gnl\|bosTau2\|chr28 (4658240-4658708)
	342-811, gnl\|Hg17\|chr1 (232971600-232972071)