Non-Coding RNA Search

Ss1.1-ramn3507b_o10.5

Sequence:


               
               GTGATTGGGTGGATAAGAATGCCAGACTTAAAGTGGCCCAGACGTCACTGGTCATCCAGA
ATGTTTCGGTCATCCTGTGTGGAATCATCCTGATGATGGTTTTCCTACATAAAGATGAGC
TTCTGACCATGTACCATGGATGGGTTCTTACTTCCTGCTATATCTTGATCATCACTATTG
CAAATATTGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGATTGGGTGGATAAGAATGCCAGACTTAAAGTGGCCCAGACGTCACTGGTCATCCAGA
ATGTTTCGGTCATCCTGTGTGGAATCATCCTGATGATGGTTTTCCTACATAAAGATGAGC
TTCTGACCATGTACCATGGATGGGTTCTTACTTCCTGCTATATCTTGATCATCACTATTG
CAAATATTGCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40204823|emb|CAE83578.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40204823|emb|CAE83578.1|

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               32-149, gnl|bosTau2|chr2 (4187112-4186995)
               

               
               32-149, gnl|canFam2|chr37 (3321013-3321142)
               

               
               32-149, gnl|danRer3|chrNA (53476051-53476179)
               

               
               32-149, gnl|echTel1|scaffold_279587 (95406-95535)
               

               
               32-149, gnl|fr1|chrUn (243131645-243131774)
               

               
               32-149, gnl|galGal2|chr7 (314940-314811)
               

               
               32-149, gnl|hg17|chr2 (190263069-190263198)
               

               
               32-149, gnl|Hg17|chr2 (190263195-190263078)
               

               
               32-149, gnl|loxAfr1|scaffold_2626 (54440-54569)
               

               
               32-149, gnl|mm7|chr1 (46155527-46155656)
               

               
               32-149, gnl|Mm7|chr1 (46155653-46155536)
               

               
               32-149, gnl|monDom2|scaffold_2 (94984642-94984771)
               

               
               32-149, gnl|oryCun1|scaffold_169231 (12268-12139)
               

               
               32-149, gnl|panTro1|chr13 (80132126-80132255)
               

               
               32-149, gnl|rheMac2|chr12 (53245779-53245908)
               

               
               32-149, gnl|rn3|chr9 (44989726-44989854)
               

               
               32-149, gnl|tetNig1|chr2 (18388734-18388864)
               

               
               32-149, gnl|xenTro1|scaffold_48 (960984-961113)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-149, gnl|bosTau2|chr2 (4187112-4186995)
               

               
               32-149, gnl|canFam2|chr37 (3321013-3321142)
               

               
               32-149, gnl|danRer3|chrNA (53476051-53476179)
               

               
               32-149, gnl|echTel1|scaffold_279587 (95406-95535)
               

               
               32-149, gnl|fr1|chrUn (243131645-243131774)
               

               
               32-149, gnl|galGal2|chr7 (314940-314811)
               

               
               32-149, gnl|hg17|chr2 (190263069-190263198)
               

               
               32-149, gnl|Hg17|chr2 (190263195-190263078)
               

               
               32-149, gnl|loxAfr1|scaffold_2626 (54440-54569)
               

               
               32-149, gnl|mm7|chr1 (46155527-46155656)
               

               
               32-149, gnl|Mm7|chr1 (46155653-46155536)
               

               
               32-149, gnl|monDom2|scaffold_2 (94984642-94984771)
               

               
               32-149, gnl|oryCun1|scaffold_169231 (12268-12139)
               

               
               32-149, gnl|panTro1|chr13 (80132126-80132255)
               

               
               32-149, gnl|rheMac2|chr12 (53245779-53245908)
               

               
               32-149, gnl|rn3|chr9 (44989726-44989854)
               

               
               32-149, gnl|tetNig1|chr2 (18388734-18388864)
               

               
               32-149, gnl|xenTro1|scaffold_48 (960984-961113)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               amn (0.417711)
               

               
               cly (0.120642)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cly (0.120642)

	32-149, gnl\|bosTau2\|chr2 (4187112-4186995)
	32-149, gnl\|canFam2\|chr37 (3321013-3321142)
	32-149, gnl\|danRer3\|chrNA (53476051-53476179)
	32-149, gnl\|echTel1\|scaffold_279587 (95406-95535)
	32-149, gnl\|fr1\|chrUn (243131645-243131774)
	32-149, gnl\|galGal2\|chr7 (314940-314811)
	32-149, gnl\|hg17\|chr2 (190263069-190263198)
	32-149, gnl\|Hg17\|chr2 (190263195-190263078)
	32-149, gnl\|loxAfr1\|scaffold_2626 (54440-54569)
	32-149, gnl\|mm7\|chr1 (46155527-46155656)
	32-149, gnl\|Mm7\|chr1 (46155653-46155536)
	32-149, gnl\|monDom2\|scaffold_2 (94984642-94984771)
	32-149, gnl\|oryCun1\|scaffold_169231 (12268-12139)
	32-149, gnl\|panTro1\|chr13 (80132126-80132255)
	32-149, gnl\|rheMac2\|chr12 (53245779-53245908)
	32-149, gnl\|rn3\|chr9 (44989726-44989854)
	32-149, gnl\|tetNig1\|chr2 (18388734-18388864)
	32-149, gnl\|xenTro1\|scaffold_48 (960984-961113)