Ss1.1-ramn3511b_b23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGGGTGGTTTGTGAAACTGGACCGTTCTGCCTTCCCTGGGTTGTTCACAGAAGCCTCG TTCTTTTACCCTTTGCTGCTTCCTTCCCCACTAAGAGGTCCTGACTGTTGACTGGCACTG TAATCCCGGGAGAGTGACTCCCCTTATAGAAATATAAGTAAAATAGCCACTGGTATCCTG GGAATTCCTGGTTGTATTTGGTGCCCTGAACCCTCTTATTAAGAGATCAGATCCCGGGGT AAGAGTAACAGGCCAGTTGGCTAATAAAGAAAGCTGTTTGGTTTTCTTTTGAGCTACGAA AAGACCCTGTTTGCAAATACATTTTTGCAAATACATTCTGCAAATACAGAAGAGAGGAAG GATATCCAAGGAACTTTGTTCTGTTTTCTGCTACAAAATGTGAATAGTTCAAAGAGTGAA ACCTTTTGTGATGGTTGATGTCTCTCAGGAATAAGCTGGATCTCCAGTTTTGGAGATGCT TTCAATCTCAAAAATTGATGATCAGAAAAGTATTTTTTGTTTGTTTGTTTAATGTATCTC TGTTCTGATTTTAATTAAACTACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGGGTGGTTTGTGAAACTGGACCGTTCTGCCTTCCCTGGGTTGTTCACAGAAGCCTCG TTCTTTTACCCTTTGCTGCTTCCTTCCCCACTAAGAGGTCCTGACTGTTGACTGGCACTG TAATCCCGGGAGAGTGACTCCCCTTATAGAAATATAAGTAAAATAGCCACTGGTATCCTG GGAATTCCTGGTTGTATTTGGTGCCCTGAACCCTCTTATTAAGAGATCAGATCCCGGGGT AAGAGTAACAGGCCAGTTGGCTAATAAAGAAAGCTGTTTGGTTTTCTTTTGAGCTACGAA AAGACCCTGTTTGCAAATACATTTTTGCAAATACATTCTGCAAATACAGAAGAGAGGAAG GATATCCAAGGAACTTTGTTCTGTTTTCTGCTACAAAATGTGAATAGTTCAAAGAGTGAA ACCTTTTGTGATGGTTGATGTCTCTCAGGAATAAGCTGGATCTCCAGTTTTGGAGATGCT TTCAATCTCAAAAATTGATGATCAGAAAAGTATTTTTTGTTTGTTTGTTTAATGTATCTC TGTTCTGATTTTAATTAAACTACA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 157-269, - strand, RNAz p=0.973149 | |
| 456-564, - strand, RNAz p=0.825537 | |
| 457-564, - strand, RNAz p=0.825537 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 157-269, - strand, RNAz p=0.973149 | |
| 456-564, - strand, RNAz p=0.825537 | |
| 457-564, - strand, RNAz p=0.825537 |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 1-324, gnl|bosTau2|chr28 (20608522-20608199) | |
| 1-324, gnl|canFam2|chr4 (24569218-24569520) | |
| 1-324, gnl|canFam2|chr4 (24569032-24569504) | |
| 1-324, gnl|dasNov1|scaffold_200486 (3920-3469) | |
| 1-324, gnl|dasNov1|scaffold_48162 (39571-39870) | |
| 1-324, gnl|echTel1|scaffold_322702 (42514-42814) | |
| 1-324, gnl|echTel1|scaffold_322702 (42338-42797) | |
| 1-324, gnl|hg17|chr10 (71853067-71853370) | |
| 1-324, gnl|Hg17|chr10 (71853082-71853442) | |
| 1-324, gnl|hg17|chr6 (98735019-98735496) | |
| 1-324, gnl|loxAfr1|scaffold_7873 (28047-27746) | |
| 1-324, gnl|loxAfr1|scaffold_7873 (28225-27762) | |
| 1-324, gnl|mm7|chr10 (60949979-60949677) | |
| 1-324, gnl|mm7|chr10 (60950176-60949679) | |
| 1-324, gnl|Mm7|chr10 (60949964-60949606) | |
| 1-324, gnl|monDom2|scaffold_41 (20269614-20269364) | |
| 1-324, gnl|monDom2|scaffold_41 (20269810-20269380) | |
| 1-324, gnl|oryCun1|scaffold_167509 (6688-6395) | |
| 1-324, gnl|oryCun1|scaffold_167509 (6864-6409) | |
| 1-324, gnl|panTro1|chr5 (100713582-100714059) | |
| 1-324, gnl|panTro1|chr8_random (38624222-38624525) | |
| 1-324, gnl|rheMac2|chr4 (94132769-94133259) | |
| 1-324, gnl|rheMac2|chr9 (66586466-66586164) | |
| 1-324, gnl|rn3|chr20 (29576324-29575956) | |
| 1-324, gnl|rn3|chr20 (29576535-29575956) | |
| 348-564, gnl|bosTau2|chr28 (20608198-20607986) | |
| 348-564, gnl|canFam2|chr4 (24569430-24569779) | |
| 348-564, gnl|canFam2|chr4 (24569736-24569505) | |
| 348-564, gnl|canFam2|chr4 (24569550-24569800) | |
| 348-564, gnl|canFam2|chr4 (24569505-24569764) | |
| 348-564, gnl|danRer3|chrNA (139143864-139143641) | |
| 348-564, gnl|dasNov1|scaffold_200486 (3232-3468) | |
| 348-564, gnl|dasNov1|scaffold_200486 (3468-3202) | |
| 348-564, gnl|dasNov1|scaffold_48162 (39780-40130) | |
| 348-564, gnl|dasNov1|scaffold_48162 (39908-40151) | |
| 348-564, gnl|echTel1|scaffold_322702 (42731-43069) | |
| 348-564, gnl|echTel1|scaffold_322702 (43027-42798) | |
| 348-564, gnl|echTel1|scaffold_322702 (42842-43090) | |
| 348-564, gnl|echTel1|scaffold_322702 (42798-43054) | |
| 348-564, gnl|hg17|chr10 (71853399-71853655) | |
| 348-564, gnl|Hg17|chr10 (71853445-71853664) | |
| 348-564, gnl|hg17|chr12 (15876830-15877182) | |
| 348-564, gnl|hg17|chr15 (40658237-40658472) | |
| 348-564, gnl|hg17|chr6 (98735497-98735764) | |
| 348-564, gnl|loxAfr1|scaffold_7873 (27831-27481) | |
| 348-564, gnl|loxAfr1|scaffold_7873 (27526-27761) | |
| 348-564, gnl|loxAfr1|scaffold_7873 (27717-27461) | |
| 348-564, gnl|loxAfr1|scaffold_7873 (27761-27496) | |
| 348-564, gnl|mm7|chr10 (60949755-60949421) | |
| 348-564, gnl|mm7|chr10 (60949462-60949676) | |
| 348-564, gnl|mm7|chr10 (60949651-60949402) | |
| 348-564, gnl|mm7|chr10 (60949678-60949435) | |
| 348-564, gnl|Mm7|chr10 (60949605-60949391) | |
| 348-564, gnl|monDom2|scaffold_41 (20269440-20269120) | |
| 348-564, gnl|monDom2|scaffold_41 (20269144-20269379) | |
| 348-564, gnl|monDom2|scaffold_41 (20269334-20269078) | |
| 348-564, gnl|monDom2|scaffold_41 (20269379-20269114) | |
| 348-564, gnl|oryCun1|scaffold_167509 (6020-6408) | |
| 348-564, gnl|oryCun1|scaffold_167509 (6408-5990) | |
| 348-564, gnl|oryCun1|scaffold_197265 (10436-10108) | |
| 348-564, gnl|oryCun1|scaffold_201684 (48649-48393) | |
| 348-564, gnl|panTro1|chr16 (40638203-40638438) | |
| 348-564, gnl|panTro1|chr5 (100714060-100714327) | |
| 348-564, gnl|panTro1|chr8_random (38624554-38624810) | |
| 348-564, gnl|panTro1|chrUn_random (42149403-42149755) | |
| 348-564, gnl|rheMac2|chr11 (16226956-16227329) | |
| 348-564, gnl|rheMac2|chr4 (94133260-94133527) | |
| 348-564, gnl|rheMac2|chr7 (21013734-21013962) | |
| 348-564, gnl|rheMac2|chr9 (66586139-66585883) | |
| 348-564, gnl|rn3|chr6 (98491244-98491515) | |
| 348-564, gnl|rn3|chr6 (98491309-98491501) | |
| 348-564, gnl|rn3|chr7 (16920851-16921061) | |
| 348-564, gnl|rn3|chr7 (17625376-17625132) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-324, gnl|bosTau2|chr28 (20608522-20608199) | |
| 1-324, gnl|canFam2|chr4 (24569218-24569520) | |
| 1-324, gnl|canFam2|chr4 (24569032-24569504) | |
| 1-324, gnl|dasNov1|scaffold_200486 (3920-3469) | |
| 1-324, gnl|dasNov1|scaffold_48162 (39571-39870) | |
| 1-324, gnl|echTel1|scaffold_322702 (42514-42814) | |
| 1-324, gnl|echTel1|scaffold_322702 (42338-42797) | |
| 1-324, gnl|hg17|chr10 (71853067-71853370) | |
| 1-324, gnl|Hg17|chr10 (71853082-71853442) | |
| 1-324, gnl|hg17|chr6 (98735019-98735496) | |
| 1-324, gnl|loxAfr1|scaffold_7873 (28047-27746) | |
| 1-324, gnl|loxAfr1|scaffold_7873 (28225-27762) | |
| 1-324, gnl|mm7|chr10 (60949979-60949677) | |
| 1-324, gnl|mm7|chr10 (60950176-60949679) | |
| 1-324, gnl|Mm7|chr10 (60949964-60949606) | |
| 1-324, gnl|monDom2|scaffold_41 (20269614-20269364) | |
| 1-324, gnl|monDom2|scaffold_41 (20269810-20269380) | |
| 1-324, gnl|oryCun1|scaffold_167509 (6688-6395) | |
| 1-324, gnl|oryCun1|scaffold_167509 (6864-6409) | |
| 1-324, gnl|panTro1|chr5 (100713582-100714059) | |
| 1-324, gnl|panTro1|chr8_random (38624222-38624525) | |
| 1-324, gnl|rheMac2|chr4 (94132769-94133259) | |
| 1-324, gnl|rheMac2|chr9 (66586466-66586164) | |
| 1-324, gnl|rn3|chr20 (29576324-29575956) | |
| 1-324, gnl|rn3|chr20 (29576535-29575956) | |
| 348-564, gnl|bosTau2|chr28 (20608198-20607986) | |
| 348-564, gnl|canFam2|chr4 (24569430-24569779) | |
| 348-564, gnl|canFam2|chr4 (24569736-24569505) | |
| 348-564, gnl|canFam2|chr4 (24569550-24569800) | |
| 348-564, gnl|canFam2|chr4 (24569505-24569764) | |
| 348-564, gnl|danRer3|chrNA (139143864-139143641) | |
| 348-564, gnl|dasNov1|scaffold_200486 (3232-3468) | |
| 348-564, gnl|dasNov1|scaffold_200486 (3468-3202) | |
| 348-564, gnl|dasNov1|scaffold_48162 (39780-40130) | |
| 348-564, gnl|dasNov1|scaffold_48162 (39908-40151) | |
| 348-564, gnl|echTel1|scaffold_322702 (42731-43069) | |
| 348-564, gnl|echTel1|scaffold_322702 (43027-42798) | |
| 348-564, gnl|echTel1|scaffold_322702 (42842-43090) | |
| 348-564, gnl|echTel1|scaffold_322702 (42798-43054) | |
| 348-564, gnl|hg17|chr10 (71853399-71853655) | |
| 348-564, gnl|Hg17|chr10 (71853445-71853664) | |
| 348-564, gnl|hg17|chr12 (15876830-15877182) | |
| 348-564, gnl|hg17|chr15 (40658237-40658472) | |
| 348-564, gnl|hg17|chr6 (98735497-98735764) | |
| 348-564, gnl|loxAfr1|scaffold_7873 (27831-27481) | |
| 348-564, gnl|loxAfr1|scaffold_7873 (27526-27761) | |
| 348-564, gnl|loxAfr1|scaffold_7873 (27717-27461) | |
| 348-564, gnl|loxAfr1|scaffold_7873 (27761-27496) | |
| 348-564, gnl|mm7|chr10 (60949755-60949421) | |
| 348-564, gnl|mm7|chr10 (60949462-60949676) | |
| 348-564, gnl|mm7|chr10 (60949651-60949402) | |
| 348-564, gnl|mm7|chr10 (60949678-60949435) | |
| 348-564, gnl|Mm7|chr10 (60949605-60949391) | |
| 348-564, gnl|monDom2|scaffold_41 (20269440-20269120) | |
| 348-564, gnl|monDom2|scaffold_41 (20269144-20269379) | |
| 348-564, gnl|monDom2|scaffold_41 (20269334-20269078) | |
| 348-564, gnl|monDom2|scaffold_41 (20269379-20269114) | |
| 348-564, gnl|oryCun1|scaffold_167509 (6020-6408) | |
| 348-564, gnl|oryCun1|scaffold_167509 (6408-5990) | |
| 348-564, gnl|oryCun1|scaffold_197265 (10436-10108) | |
| 348-564, gnl|oryCun1|scaffold_201684 (48649-48393) | |
| 348-564, gnl|panTro1|chr16 (40638203-40638438) | |
| 348-564, gnl|panTro1|chr5 (100714060-100714327) | |
| 348-564, gnl|panTro1|chr8_random (38624554-38624810) | |
| 348-564, gnl|panTro1|chrUn_random (42149403-42149755) | |
| 348-564, gnl|rheMac2|chr11 (16226956-16227329) | |
| 348-564, gnl|rheMac2|chr4 (94133260-94133527) | |
| 348-564, gnl|rheMac2|chr7 (21013734-21013962) | |
| 348-564, gnl|rheMac2|chr9 (66586139-66585883) | |
| 348-564, gnl|rn3|chr6 (98491244-98491515) | |
| 348-564, gnl|rn3|chr6 (98491309-98491501) | |
| 348-564, gnl|rn3|chr7 (16920851-16921061) | |
| 348-564, gnl|rn3|chr7 (17625376-17625132) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| amn (0.417711) | |
| nms (0.213858) | |
| bfe (0.149858) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| eje (0.0988338) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| nms (0.213858) | |
| bfe (0.149858) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| eje (0.0988338) |