Non-Coding RNA Search

Ss1.1-ramn3511b_d21.5

Sequence:


               
               TGCCATCATCCTGCATCCCAACTATGACCCCATCCTGCTGGATGCCGACATCGCCGTCCT
GAAGCTCCTGGACAAGGCTCGCATCAGCAGCCGCGTCCAGCCCATCTGCCTGGCGGCCTC
TCGGGACCTCAGCACCTCCTTCCAGGAGGCCCGCATCACCGTGGCCGGATGGAACATCCT
GGCAGACGCAAGGAGCCCCGGCTTCAAGAATGACACACTGCGCTCGGGGGTGGTCAGGGT
GGCGGACTCGCTGCTGTGTGAGGAGCAGCACGAGGACCACGGCATCCCAGTGAGTGTCAC
GGACAACATGTTCTGTGCCAGCTGGGACCACACCGCCCCTTCGAACATCTGCACAGCAGA
GACGGGCGGCATCGCGGCTGTGTCCTTCCCAGGACGGGCGTCCCCTGAGCCCCGCTGGCA
TCTGGTGGGGCTGGTCAGCTGGAGCTACGACAAAACATGCACCCACAGCCTTTACACAGC
CTTCACCAAAGTGCTGCCTTTTAAAGACTGGATAGAGAGAAACATGAAATGAGCCGCAGG
CCCACGGGGTGGCTTTTCCTTGCATCTATCCGTATGTGTGTGTTGCCCCAGGCAGTTTGG
ACCCGAAGTCTGCTTCTGCCCGTGAATTTGGCTGCACCAGGGCTTCTGATTTCAAAACCA
GTGGAAGGTGCGTAGAGCTTACTTTCTGGTAAGCCACTGCCTCCCTGCCTGCTGGGACCA
TTTGGAAGACACCAGAGCCACTTGCAAGAATTCAGTGTCTTCAAAATAGATGATATGAAC
AGTGAAAAAAATCCTCCCAGTTCAACGGACCCAGTGGCCTTCTCCATGCCTTCTTCAGCG
GTGTGACTGCGACTGCCATGGCCAACTCTGGTCAAGACTGGCTTCATCAGGTCTCTTCCC
AGGCTCCAGCCAGACCGAGTTCTCAAGAGCTGCCTGTAGGACAGCCCCAGAAGGTAGAGC
CTGGCTATGATGTTGGTGTCAGCCCACACTGTCACTGCCACAACACGACGTGGTCCTTGC
CCTCTCCAATCCCCTGTACACGTTTTAATAAAACAAGGGTTGGCTTTGGACCCACAGAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCATCATCCTGCATCCCAACTATGACCCCATCCTGCTGGATGCCGACATCGCCGTCCT
GAAGCTCCTGGACAAGGCTCGCATCAGCAGCCGCGTCCAGCCCATCTGCCTGGCGGCCTC
TCGGGACCTCAGCACCTCCTTCCAGGAGGCCCGCATCACCGTGGCCGGATGGAACATCCT
GGCAGACGCAAGGAGCCCCGGCTTCAAGAATGACACACTGCGCTCGGGGGTGGTCAGGGT
GGCGGACTCGCTGCTGTGTGAGGAGCAGCACGAGGACCACGGCATCCCAGTGAGTGTCAC
GGACAACATGTTCTGTGCCAGCTGGGACCACACCGCCCCTTCGAACATCTGCACAGCAGA
GACGGGCGGCATCGCGGCTGTGTCCTTCCCAGGACGGGCGTCCCCTGAGCCCCGCTGGCA
TCTGGTGGGGCTGGTCAGCTGGAGCTACGACAAAACATGCACCCACAGCCTTTACACAGC
CTTCACCAAAGTGCTGCCTTTTAAAGACTGGATAGAGAGAAACATGAAATGAGCCGCAGG
CCCACGGGGTGGCTTTTCCTTGCATCTATCCGTATGTGTGTGTTGCCCCAGGCAGTTTGG
ACCCGAAGTCTGCTTCTGCCCGTGAATTTGGCTGCACCAGGGCTTCTGATTTCAAAACCA
GTGGAAGGTGCGTAGAGCTTACTTTCTGGTAAGCCACTGCCTCCCTGCCTGCTGGGACCA
TTTGGAAGACACCAGAGCCACTTGCAAGAATTCAGTGTCTTCAAAATAGATGATATGAAC
AGTGAAAAAAATCCTCCCAGTTCAACGGACCCAGTGGCCTTCTCCATGCCTTCTTCAGCG
GTGTGACTGCGACTGCCATGGCCAACTCTGGTCAAGACTGGCTTCATCAGGTCTCTTCCC
AGGCTCCAGCCAGACCGAGTTCTCAAGAGCTGCCTGTAGGACAGCCCCAGAAGGTAGAGC
CTGGCTATGATGTTGGTGTCAGCCCACACTGTCACTGCCACAACACGACGTGGTCCTTGC
CCTCTCCAATCCCCTGTACACGTTTTAATAAAACAAGGGTTGGCTTTGGACCCACAGAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|4884453|emb|CAB43317.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4884453|emb|CAB43317.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-976, gnl|bosTau2|chr15 (39685354-39686333)
               

               
               1-976, gnl|Hg17|chr11 (35411011-35410032)
               

               
               1-976, gnl|Mm7|chr2 (102492776-102493742)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-976, gnl|bosTau2|chr15 (39685354-39686333)
               

               
               1-976, gnl|Hg17|chr11 (35411011-35410032)
               

               
               1-976, gnl|Mm7|chr2 (102492776-102493742)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               elu (0.385356)
               

               
               fcc (0.197785)
               

               
               csp (0.161186)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               elu (0.385356)
               

               
               fcc (0.197785)
               

               
               csp (0.161186)
               

               
               nmm (0.132802)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	1-976, gnl\|bosTau2\|chr15 (39685354-39686333)
	1-976, gnl\|Hg17\|chr11 (35411011-35410032)
	1-976, gnl\|Mm7\|chr2 (102492776-102493742)

	amn (0.417711)
	elu (0.385356)
	fcc (0.197785)
	csp (0.161186)
	nmm (0.132802)
	jca (0.11396)
	nbm (0.0993246)