Non-Coding RNA Search

Ss1.1-ramn3511b_i2.5

Sequence:


               
               AGTTTTTGTGGTAACTGGTAATAGATGACAGTCTACTGCATAAATGTGAATGATTTGGAT
TAATCTGTTGCAGTTACATGGTATATAAACAGTTGAAATCTAGTGTGAAAGTTTAAAAAG
AAATACTGCACAATATTTCTTAAAAGTGAAATACTCTGTCCTGGTGAAATTATTTGGTTT
AACATCAGATTATTTTGCGAGGTCTTTTGAACTTTTTGGAAAGTGGTATCACTTGTAGAA
AAATTTTGATTTGGGTTAAATACATTTTTTTAGTATAGTAGATTTATAATGTTCTGTCAA
TTTCTGCTGTACAGCAGAGTGACCCAGTTATACATTTATACACATCTTTTTTTTTTTTTA
CATTATCTTCCACCATGCTCCACCACAAGTGATTATAGTTCCCTGTGCTATACAGCAGGA
AATAGAGGTTTTTAAAATTACAGATATCTTTTATATTTCTATGAAAAAGTAGTAAAAGAT
TACTTTTGAAGAAGATGGACTTCTATTTAAATGTTTATGTGTGTTATGAGTTTAAGGATC
TGTCATTTCCTGTTTTATCTGCTTTCAGTGATTGTCAATAAACTCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTTTTGTGGTAACTGGTAATAGATGACAGTCTACTGCATAAATGTGAATGATTTGGAT
TAATCTGTTGCAGTTACATGGTATATAAACAGTTGAAATCTAGTGTGAAAGTTTAAAAAG
AAATACTGCACAATATTTCTTAAAAGTGAAATACTCTGTCCTGGTGAAATTATTTGGTTT
AACATCAGATTATTTTGCGAGGTCTTTTGAACTTTTTGGAAAGTGGTATCACTTGTAGAA
AAATTTTGATTTGGGTTAAATACATTTTTTTAGTATAGTAGATTTATAATGTTCTGTCAA
TTTCTGCTGTACAGCAGAGTGACCCAGTTATACATTTATACACATCTTTTTTTTTTTTTA
CATTATCTTCCACCATGCTCCACCACAAGTGATTATAGTTCCCTGTGCTATACAGCAGGA
AATAGAGGTTTTTAAAATTACAGATATCTTTTATATTTCTATGAAAAAGTAGTAAAAGAT
TACTTTTGAAGAAGATGGACTTCTATTTAAATGTTTATGTGTGTTATGAGTTTAAGGATC
TGTCATTTCCTGTTTTATCTGCTTTCAGTGATTGTCAATAAACTCTCA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               2-272, gnl|bosTau2|chr7 (30422620-30422889)
               

               
               2-272, gnl|Hg17|chr5 (132361220-132360950)
               


               
               420-585, gnl|bosTau2|chr7 (30422875-30423058)
               

               
               420-585, gnl|Hg17|chr5 (132360964-132360780)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-272, gnl|bosTau2|chr7 (30422620-30422889)
               

               
               2-272, gnl|Hg17|chr5 (132361220-132360950)
               


               
               420-585, gnl|bosTau2|chr7 (30422875-30423058)
               

               
               420-585, gnl|Hg17|chr5 (132360964-132360780)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               amn (0.417711)
               

               
               fco (0.157208)
               

               
               kid (0.129735)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fco (0.157208)
               

               
               kid (0.129735)

	2-272, gnl\|bosTau2\|chr7 (30422620-30422889)
	2-272, gnl\|Hg17\|chr5 (132361220-132360950)

	420-585, gnl\|bosTau2\|chr7 (30422875-30423058)
	420-585, gnl\|Hg17\|chr5 (132360964-132360780)