Ss1.1-ramn3511b_o8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACAAGCAGTGGCTACTGCAGCCAGGAGGACTCGGACTCAGAGCTCGAGCAGTACTTCAC CGCGCGTACCTCGCTGGCTCGGAGGCCGCGCCGGGACCAGGATGAGCCCGTGGAGTGGGA GACACCTGACCTTTCTCAGGCTGAGATTGAGCAGAAGATCAAGGAGTACAACAGCCAGAT CAACAGCAACCTGTTCATGAGCCTTAACAAAGACGGCTCCTATACAGGCTTCATCAAGGT TCAGCTGAAGCTGGTGCGTCCTGTATCCGTTCCCTCCAGCAAGAAGCCACCCTCCTTGCA GGATGCCCGGCGGGGCCCAGGGCGGGGCACAGCTGTGAAACGCCGTACCTCCTTCTACCT GCCTAAGGATGCTGTCAAGCACCTGCATGTGTTGTCACGCACCCGGGCACGTGAAGTCAT CGAGGCCCTGCTGCGCAAGTTCTTGGTGGTAGATGATCCCCGCAAGTTTGCGCTCTTTGA GCGGGCTGAGCGCCATGGCCAAGTGTACCTCCGGAAGCTATCAGATGATGAGCAGCCCCT TCGGCTCCGGCTCCTCGCAGGGCCCAGTGAGAAGGCCCTAAGCTTTGTCCTGAAAGAAAA TGACTCTGGGGAGGTGAACTGGGATGCTTTCAGCATGCCTGAACTACACAACTTCCTACG CATCCTGCAGCGGGAAGAAGAGGAACACCTCCGCCAGATCCTGAAGAAGTACTCCTATTG CCGCCAGAAGATCCAGGAAGCCCTGCATGCCTGCCCCCTGGGGTGACCTCTTGTACCCCT GGGGTGACCTCTTGTACCCCTGGGTGGAAGGAGGAGAGTAGGCAGCGCCAAGGGCGTGCC GTGTGAGTGTGCGAAGGCCCATGTGGCCTGAGGAATGAATGTGCATGGAGGCCCTCTCTT GCTGGGGGAATGAGCCCAGAGAACAGCGAAGGAGCTGGTCCCCTGTGTCCACAAGTGGGT GTAACAGAGCATGGCTCTGCACCCTTCTGCCCTTCATGTACTGGGTCATGGTGGGCCAGG GTTGCCCTGGGAAGCTGCTCCAGGGTTGCCAATGGGGCTGGAGCAGACAGAAGTCTACTT AATTTGTATCTTAGATACAAGAATCTTTGAGATCCTACAAACAAATAATAGGGTCATGTT TGCAGGGATGAGGGCCCTCATCTATGGTGAAAGATTGTGTTTTAAGTCTTGGATAGGGTC TCAGGACAGCCCTGTCACAACCAAGGATGGATATTCTAGGCATCAAGGAAGTCTAGGATT CTCTCTGTAGCACCCTCTGACTCCTCAGACACTCTGGGGTCAGGTAGTGCTAGCTCATGG TGCAGCAATGGTGCCTCAGTGCCTCCTCCAAGGAGGATGTCCCTGGGTCAGGGTTTGTGT GTGGGCACTGGCCCACCTCTGTGCCTTGTTTGCCAGTCAAAGCCAGGGTCTTTCCCTTGA GTATTTTTGATGATGTGTGCGAATGTATGTAATATTTTGTGACCTCAGCTCACTGCCTCC TGTTGGGAAAGGGGTCGGGGTGAAGGGCATCAGGGCCTGGGGCTTGAGAGAATTGGCTGA ATAAAGATTTAAGCATTCAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACAAGCAGTGGCTACTGCAGCCAGGAGGACTCGGACTCAGAGCTCGAGCAGTACTTCAC CGCGCGTACCTCGCTGGCTCGGAGGCCGCGCCGGGACCAGGATGAGCCCGTGGAGTGGGA GACACCTGACCTTTCTCAGGCTGAGATTGAGCAGAAGATCAAGGAGTACAACAGCCAGAT CAACAGCAACCTGTTCATGAGCCTTAACAAAGACGGCTCCTATACAGGCTTCATCAAGGT TCAGCTGAAGCTGGTGCGTCCTGTATCCGTTCCCTCCAGCAAGAAGCCACCCTCCTTGCA GGATGCCCGGCGGGGCCCAGGGCGGGGCACAGCTGTGAAACGCCGTACCTCCTTCTACCT GCCTAAGGATGCTGTCAAGCACCTGCATGTGTTGTCACGCACCCGGGCACGTGAAGTCAT CGAGGCCCTGCTGCGCAAGTTCTTGGTGGTAGATGATCCCCGCAAGTTTGCGCTCTTTGA GCGGGCTGAGCGCCATGGCCAAGTGTACCTCCGGAAGCTATCAGATGATGAGCAGCCCCT TCGGCTCCGGCTCCTCGCAGGGCCCAGTGAGAAGGCCCTAAGCTTTGTCCTGAAAGAAAA TGACTCTGGGGAGGTGAACTGGGATGCTTTCAGCATGCCTGAACTACACAACTTCCTACG CATCCTGCAGCGGGAAGAAGAGGAACACCTCCGCCAGATCCTGAAGAAGTACTCCTATTG CCGCCAGAAGATCCAGGAAGCCCTGCATGCCTGCCCCCTGGGGTGACCTCTTGTACCCCT GGGGTGACCTCTTGTACCCCTGGGTGGAAGGAGGAGAGTAGGCAGCGCCAAGGGCGTGCC GTGTGAGTGTGCGAAGGCCCATGTGGCCTGAGGAATGAATGTGCATGGAGGCCCTCTCTT GCTGGGGGAATGAGCCCAGAGAACAGCGAAGGAGCTGGTCCCCTGTGTCCACAAGTGGGT GTAACAGAGCATGGCTCTGCACCCTTCTGCCCTTCATGTACTGGGTCATGGTGGGCCAGG GTTGCCCTGGGAAGCTGCTCCAGGGTTGCCAATGGGGCTGGAGCAGACAGAAGTCTACTT AATTTGTATCTTAGATACAAGAATCTTTGAGATCCTACAAACAAATAATAGGGTCATGTT TGCAGGGATGAGGGCCCTCATCTATGGTGAAAGATTGTGTTTTAAGTCTTGGATAGGGTC TCAGGACAGCCCTGTCACAACCAAGGATGGATATTCTAGGCATCAAGGAAGTCTAGGATT CTCTCTGTAGCACCCTCTGACTCCTCAGACACTCTGGGGTCAGGTAGTGCTAGCTCATGG TGCAGCAATGGTGCCTCAGTGCCTCCTCCAAGGAGGATGTCCCTGGGTCAGGGTTTGTGT GTGGGCACTGGCCCACCTCTGTGCCTTGTTTGCCAGTCAAAGCCAGGGTCTTTCCCTTGA GTATTTTTGATGATGTGTGCGAATGTATGTAATATTTTGTGACCTCAGCTCACTGCCTCC TGTTGGGAAAGGGGTCGGGGTGAAGGGCATCAGGGCCTGGGGCTTGAGAGAATTGGCTGA ATAAAGATTTAAGCATTCAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 815-1200, - strand, RNAz p=0.999895 | |
| 1236-1453, + strand, RNAz p=0.999772 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 815-1200, - strand, RNAz p=0.999895 | |
| 1236-1453, + strand, RNAz p=0.999772 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_170716, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 98-204, gnl|bosTau2|chr22 (38610119-38610013) | |
| 98-204, gnl|canFam2|chr20 (42021284-42021121) | |
| 98-204, gnl|danRer3|chr6 (30764628-30764487) | |
| 98-204, gnl|dasNov1|scaffold_58535 (5264-5095) | |
| 98-204, gnl|echTel1|scaffold_308765 (44173-44010) | |
| 98-204, gnl|fr1|chrUn (178155292-178155417) | |
| 98-204, gnl|galGal2|chr26 (1081945-1081810) | |
| 98-204, gnl|hg17|chr3 (50344471-50344634) | |
| 98-204, gnl|Hg17|chr3 (50344592-50344486) | |
| 98-204, gnl|loxAfr1|scaffold_9566 (12182-12026) | |
| 98-204, gnl|mm7|chr9 (107287021-107286858) | |
| 98-204, gnl|Mm7|chr9 (107286898-107287004) | |
| 98-204, gnl|monDom2|scaffold_5 (73968323-73968159) | |
| 98-204, gnl|oryCun1|scaffold_203260 (7687-7786) | |
| 98-204, gnl|panTro1|chr2 (51923554-51923717) | |
| 98-204, gnl|rheMac2|chr2 (86082915-86082752) | |
| 98-204, gnl|rn3|chr8 (112824936-112824773) | |
| 98-204, gnl|tetNig1|chr11 (4412574-4412446) | |
| 98-204, gnl|xenTro1|scaffold_189 (890415-890534) | |
| 206-503, gnl|bosTau2|chr22 (38609817-38609520) | |
| 206-503, gnl|Hg17|chr3 (50344291-50343994) | |
| 206-503, gnl|Mm7|chr9 (107287218-107287515) | |
| 212-484, gnl|bosTau2|chr16 (3101557-3101829) | |
| 212-484, gnl|Hg17|chr1 (203146120-203146392) | |
| 212-484, gnl|Mm7|chr1 (131085564-131085292) | |
| 776-1578, gnl|bosTau2|chr22 (38608473-38607650) | |
| 776-1578, gnl|Hg17|chr3 (50343027-50342220) | |
| 776-1578, gnl|Mm7|chr9 (107290982-107291712) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-204, gnl|bosTau2|chr22 (38610119-38610013) | |
| 98-204, gnl|canFam2|chr20 (42021284-42021121) | |
| 98-204, gnl|danRer3|chr6 (30764628-30764487) | |
| 98-204, gnl|dasNov1|scaffold_58535 (5264-5095) | |
| 98-204, gnl|echTel1|scaffold_308765 (44173-44010) | |
| 98-204, gnl|fr1|chrUn (178155292-178155417) | |
| 98-204, gnl|galGal2|chr26 (1081945-1081810) | |
| 98-204, gnl|hg17|chr3 (50344471-50344634) | |
| 98-204, gnl|Hg17|chr3 (50344592-50344486) | |
| 98-204, gnl|loxAfr1|scaffold_9566 (12182-12026) | |
| 98-204, gnl|mm7|chr9 (107287021-107286858) | |
| 98-204, gnl|Mm7|chr9 (107286898-107287004) | |
| 98-204, gnl|monDom2|scaffold_5 (73968323-73968159) | |
| 98-204, gnl|oryCun1|scaffold_203260 (7687-7786) | |
| 98-204, gnl|panTro1|chr2 (51923554-51923717) | |
| 98-204, gnl|rheMac2|chr2 (86082915-86082752) | |
| 98-204, gnl|rn3|chr8 (112824936-112824773) | |
| 98-204, gnl|tetNig1|chr11 (4412574-4412446) | |
| 98-204, gnl|xenTro1|scaffold_189 (890415-890534) | |
| 206-503, gnl|bosTau2|chr22 (38609817-38609520) | |
| 206-503, gnl|Hg17|chr3 (50344291-50343994) | |
| 206-503, gnl|Mm7|chr9 (107287218-107287515) | |
| 212-484, gnl|bosTau2|chr16 (3101557-3101829) | |
| 212-484, gnl|Hg17|chr1 (203146120-203146392) | |
| 212-484, gnl|Mm7|chr1 (131085564-131085292) | |
| 776-1578, gnl|bosTau2|chr22 (38608473-38607650) | |
| 776-1578, gnl|Hg17|chr3 (50343027-50342220) | |
| 776-1578, gnl|Mm7|chr9 (107290982-107291712) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| amn (0.835422) | |
| lnt (0.426925) | |
| cut (0.339847) | |
| che (0.272628) | |
| pgl (0.236967) | |
| fty (0.17584) | |
| ton (0.1755) | |
| cki (0.165235) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| clu (0.119646) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| lnt (0.426925) | |
| cut (0.339847) | |
| che (0.272628) | |
| pgl (0.236967) | |
| fty (0.17584) | |
| ton (0.1755) | |
| cki (0.165235) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| clu (0.119646) | |
| med (0.116252) | |
| cty (0.10408) |