Non-Coding RNA Search

Ss1.1-ramn3531b_n19.5

Sequence:


               
               CTTGGTGGCTTCAGTGTTTCGGGGGCTGAGTTTCCCCTTCAGTGAGAGCTGGAAGGGTGG
CTTAGCTGGTCTCTCAGGCCCTGCCTAGTCGTGACATTCTGCTAACATCCTCCAATTCTA
GAGACGATGTTGACTCTGTCCTTTCAAGGAAAAACTTGGAATAGAGGGGAAAGGAAGCCC
TGAAAAGCAACTCCTTTGCTTCCTGATTCAGTCCTATCATCCCTACCAGCCAGTCCCAGC
CAAGAAAGTCCTGCTTGATTCATTTCCATGGAATTACGCGTGAGAGGCACTTTGACGACC
TGGTGGACCAAGCGGGAGATTCCAGATTAGCGCTCCTGGTCCTCTCCTTGCTTCCTTGGG
CCTTTCAGTGTCTTAGTTTACACATCTGCCAAAGGAGTAGAATGATACTTCTTTCTTAAC
AGGTAAATTTCAAGGCCTGATCAGTTTTCAGGAAGTGCTTCAAGACCCCAGGCGAAATGA
AAATGCTAAGTACTCTCTGAATTTCCGTCCCTATTATAAGGTGCTGCTTCTGCAGATGAC
AAAGGAGCACCTTGCAGGGTGAGAATCTCAGATGGGTGTTGGCCGGGCCTGCTGCCTTGA
GTACAAATGTGAATGACTGACTGACTGCTTATTGCCAAACTGGAAATGTTCTGTAGGGGT
TTACTGGCATGGTATCATTCCTAGAAGAAGAAAAAAAAAAAAAAGAAACTTGACTGCACA
TTTTTTTTTTTTTTTAAATCCATGTTGTGACTTTTATTTAATTTCTATTTTTTTGGTAAT
AAAAAGTTGACTTTTTTATTTGAATTTGTCTTTTTTATTTATTGGTCTGAAAGGCATTTC
AAAGGTATTATAATAATATATTGGTGTAATTTAATTGGTGCAACATGTTTAATGGCTCCA
GTAAAAATTGGTTTTCATTCATTGGATTGGTTTGAGCCCAGGACTGCCTACAGGAGAGGA
GGAAGAAAAAAAAAAAAAAAAAAGCCAGATAACTACCCAGAGTGTTTGTATTTTCATTGG
AAACTGATTTTTGTTTTGGTTTTTTTGGTTCCTGTTTTTATTTTTAAATTAAATAAATTG
CCATGAACTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGTGGCTTCAGTGTTTCGGGGGCTGAGTTTCCCCTTCAGTGAGAGCTGGAAGGGTGG
CTTAGCTGGTCTCTCAGGCCCTGCCTAGTCGTGACATTCTGCTAACATCCTCCAATTCTA
GAGACGATGTTGACTCTGTCCTTTCAAGGAAAAACTTGGAATAGAGGGGAAAGGAAGCCC
TGAAAAGCAACTCCTTTGCTTCCTGATTCAGTCCTATCATCCCTACCAGCCAGTCCCAGC
CAAGAAAGTCCTGCTTGATTCATTTCCATGGAATTACGCGTGAGAGGCACTTTGACGACC
TGGTGGACCAAGCGGGAGATTCCAGATTAGCGCTCCTGGTCCTCTCCTTGCTTCCTTGGG
CCTTTCAGTGTCTTAGTTTACACATCTGCCAAAGGAGTAGAATGATACTTCTTTCTTAAC
AGGTAAATTTCAAGGCCTGATCAGTTTTCAGGAAGTGCTTCAAGACCCCAGGCGAAATGA
AAATGCTAAGTACTCTCTGAATTTCCGTCCCTATTATAAGGTGCTGCTTCTGCAGATGAC
AAAGGAGCACCTTGCAGGGTGAGAATCTCAGATGGGTGTTGGCCGGGCCTGCTGCCTTGA
GTACAAATGTGAATGACTGACTGACTGCTTATTGCCAAACTGGAAATGTTCTGTAGGGGT
TTACTGGCATGGTATCATTCCTAGAAGAAGAAAAAAAAAAAAAAGAAACTTGACTGCACA
TTTTTTTTTTTTTTTAAATCCATGTTGTGACTTTTATTTAATTTCTATTTTTTTGGTAAT
AAAAAGTTGACTTTTTTATTTGAATTTGTCTTTTTTATTTATTGGTCTGAAAGGCATTTC
AAAGGTATTATAATAATATATTGGTGTAATTTAATTGGTGCAACATGTTTAATGGCTCCA
GTAAAAATTGGTTTTCATTCATTGGATTGGTTTGAGCCCAGGACTGCCTACAGGAGAGGA
GGAAGAAAAAAAAAAAAAAAAAAGCCAGATAACTACCCAGAGTGTTTGTATTTTCATTGG
AAACTGATTTTTGTTTTGGTTTTTTTGGTTCCTGTTTTTATTTTTAAATTAAATAAATTG
CCATGAACTGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               477-596, + strand, RNAz p=0.731868

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               477-596, + strand, RNAz p=0.731868

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               500-591, + strand, RNAmicro p=0.999905

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               500-591, + strand, RNAmicro p=0.999905

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014840, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014840, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-1092, gnl|bosTau2|chr2 (81546947-81545903)
               

               
               9-1092, gnl|Hg17|chr12 (104960638-104959590)
               

               
               9-1092, gnl|Mm7|chr10 (83913485-83912414)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-1092, gnl|bosTau2|chr2 (81546947-81545903)
               

               
               9-1092, gnl|Hg17|chr12 (104960638-104959590)
               

               
               9-1092, gnl|Mm7|chr10 (83913485-83912414)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fbs (0.526039)
               

               
               amn (0.417711)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.526039)
               

               
               amn (0.417711)
               

               
               rec (0.17307)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ebs (0.118301)

	9-1092, gnl\|bosTau2\|chr2 (81546947-81545903)
	9-1092, gnl\|Hg17\|chr12 (104960638-104959590)
	9-1092, gnl\|Mm7\|chr10 (83913485-83912414)

	fbs (0.526039)
	amn (0.417711)
	rec (0.17307)
	lun (0.150489)
	fat (0.147427)
	spl (0.143184)
	hyp (0.142837)
	lyg (0.133103)
	ova (0.129132)
	ebs (0.118301)