Non-Coding RNA Search

Ss1.1-ramn3531b_n7.5

Sequence:


               
               AAAAAAAAATTGAATGTAGTTTTGTTAGTACATGCAGATTTAGTGGATTTTTTAGTCATA
AAATAATGGTTACCACTGGTAACACGACAAGCACATCATAATTCTCCCTATCTTGTGGAG
TCCCCCCCCACTCCCCCCCTTTTTTTCTTTTCTTTTTCTTTCCAAAATTCATGGAAGCCA
AGGAGGGCAGGGGCAAGCGGAATAGACTAGAGAAGGGAGACATTTTTGGGGTTTCCTTTA
TACTGTGAAGTTACATGCATAAAAGGGTCAAACCTGTAGGTGCAGAAAAAGAAAAAAACT
ATAAAATACAAATCTGTATAAATGTCTATTATTATGAAAAATCGCCAATCTTGTTTTATG
CAAATGCATTCTATCGTTATTATAAATGTTAGTTCTAGCTCTATTTACTTCTAATCTTAA
ATCAGAATAAATTAATATTGTAATGCTGCTGTGCGTGGAAAAAAGATGATGTTTATGTTC
TTATAGAAGAATAAAAGCTGTGGAATGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAATTGAATGTAGTTTTGTTAGTACATGCAGATTTAGTGGATTTTTTAGTCATA
AAATAATGGTTACCACTGGTAACACGACAAGCACATCATAATTCTCCCTATCTTGTGGAG
TCCCCCCCCACTCCCCCCCTTTTTTTCTTTTCTTTTTCTTTCCAAAATTCATGGAAGCCA
AGGAGGGCAGGGGCAAGCGGAATAGACTAGAGAAGGGAGACATTTTTGGGGTTTCCTTTA
TACTGTGAAGTTACATGCATAAAAGGGTCAAACCTGTAGGTGCAGAAAAAGAAAAAAACT
ATAAAATACAAATCTGTATAAATGTCTATTATTATGAAAAATCGCCAATCTTGTTTTATG
CAAATGCATTCTATCGTTATTATAAATGTTAGTTCTAGCTCTATTTACTTCTAATCTTAA
ATCAGAATAAATTAATATTGTAATGCTGCTGTGCGTGGAAAAAAGATGATGTTTATGTTC
TTATAGAAGAATAAAAGCTGTGGAATGAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               43-144, - strand, RNAz p=0.783117
               

               
               174-327, - strand, RNAz p=0.982007

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-144, - strand, RNAz p=0.783117
               

               
               174-327, - strand, RNAz p=0.982007

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               4-509, gnl|bosTau2|chr4 (40171854-40172344)
               

               
               4-509, gnl|canFam2|chr14 (43300315-43301072)
               

               
               4-509, gnl|dasNov1|scaffold_191406 (6721-7471)
               

               
               4-509, gnl|echTel1|scaffold_290176 (43541-42784)
               

               
               4-509, gnl|galGal2|chr2 (31825148-31825930)
               

               
               4-509, gnl|hg17|chr7 (26983165-26983920)
               

               
               4-509, gnl|Hg17|chr7 (26983973-26983464)
               

               
               4-509, gnl|loxAfr1|scaffold_4768 (75811-76547)
               

               
               4-509, gnl|mm7|chr6 (52194266-52195041)
               

               
               4-509, gnl|Mm7|chr6 (52195092-52194566)
               

               
               4-509, gnl|monDom2|scaffold_57 (906214-905466)
               

               
               4-509, gnl|oryCun1|scaffold_200437 (139352-138593)
               

               
               4-509, gnl|panTro1|chr6 (28113232-28113988)
               

               
               4-509, gnl|rheMac2|chr3 (99054992-99054235)
               

               
               4-509, gnl|rn3|chr4 (80809728-80810500)
               

               
               4-509, gnl|xenTro1|scaffold_29 (1948236-1949001)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-509, gnl|bosTau2|chr4 (40171854-40172344)
               

               
               4-509, gnl|canFam2|chr14 (43300315-43301072)
               

               
               4-509, gnl|dasNov1|scaffold_191406 (6721-7471)
               

               
               4-509, gnl|echTel1|scaffold_290176 (43541-42784)
               

               
               4-509, gnl|galGal2|chr2 (31825148-31825930)
               

               
               4-509, gnl|hg17|chr7 (26983165-26983920)
               

               
               4-509, gnl|Hg17|chr7 (26983973-26983464)
               

               
               4-509, gnl|loxAfr1|scaffold_4768 (75811-76547)
               

               
               4-509, gnl|mm7|chr6 (52194266-52195041)
               

               
               4-509, gnl|Mm7|chr6 (52195092-52194566)
               

               
               4-509, gnl|monDom2|scaffold_57 (906214-905466)
               

               
               4-509, gnl|oryCun1|scaffold_200437 (139352-138593)
               

               
               4-509, gnl|panTro1|chr6 (28113232-28113988)
               

               
               4-509, gnl|rheMac2|chr3 (99054992-99054235)
               

               
               4-509, gnl|rn3|chr4 (80809728-80810500)
               

               
               4-509, gnl|xenTro1|scaffold_29 (1948236-1949001)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               kid (0.259471)
               

               
               nco (0.161734)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               kid (0.259471)
               

               
               nco (0.161734)
               

               
               bla (0.124347)

	43-144, - strand, RNAz p=0.783117
	174-327, - strand, RNAz p=0.982007

	4-509, gnl\|bosTau2\|chr4 (40171854-40172344)
	4-509, gnl\|canFam2\|chr14 (43300315-43301072)
	4-509, gnl\|dasNov1\|scaffold_191406 (6721-7471)
	4-509, gnl\|echTel1\|scaffold_290176 (43541-42784)
	4-509, gnl\|galGal2\|chr2 (31825148-31825930)
	4-509, gnl\|hg17\|chr7 (26983165-26983920)
	4-509, gnl\|Hg17\|chr7 (26983973-26983464)
	4-509, gnl\|loxAfr1\|scaffold_4768 (75811-76547)
	4-509, gnl\|mm7\|chr6 (52194266-52195041)
	4-509, gnl\|Mm7\|chr6 (52195092-52194566)
	4-509, gnl\|monDom2\|scaffold_57 (906214-905466)
	4-509, gnl\|oryCun1\|scaffold_200437 (139352-138593)
	4-509, gnl\|panTro1\|chr6 (28113232-28113988)
	4-509, gnl\|rheMac2\|chr3 (99054992-99054235)
	4-509, gnl\|rn3\|chr4 (80809728-80810500)
	4-509, gnl\|xenTro1\|scaffold_29 (1948236-1949001)