Non-Coding RNA Search

Ss1.1-ramn3533b_e20.5

Sequence:


               
               ACTGTGAGCCTGTGGAATAAGAAAGTAGAATTCCCAGGCGCTTCTAACCTGGGAGCCAGG
ACAAGCAAACTCTCAAACAGCATAAACGCAAACAATTCAAAACCCCCATCCAACAGGAGA
GCTGTCTCTAGACAGCAGTGGCTGTAGGTACCAAGGGCAGATCAGATTCGCTGTACGGAG
CCCCGGGGCTGCTCGGCTTCCCTCTCTGGGTCTCTAGAAAAGGACAGTTGGTAATAGCCC
CGGCGCACTCATGATTGGAATTCTTTGAACCCTCAAAGTGCTTCCGCAGTACTAATCCCC
ACGGCACCAGTGGGTCCACGTCGCTTGAATATTATTTTTTATTTGACCACCAAGATGAGA
TGATGATTCTGTTTCCTTTTGAAAACGGTCTGAGAAAGTGTACAGGTCTAATTCTATATA
CATATTTATACATGTGTATTTTTGTTTATTGTTACATTTTGACATTGGACTTTCTATTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGTGAGCCTGTGGAATAAGAAAGTAGAATTCCCAGGCGCTTCTAACCTGGGAGCCAGG
ACAAGCAAACTCTCAAACAGCATAAACGCAAACAATTCAAAACCCCCATCCAACAGGAGA
GCTGTCTCTAGACAGCAGTGGCTGTAGGTACCAAGGGCAGATCAGATTCGCTGTACGGAG
CCCCGGGGCTGCTCGGCTTCCCTCTCTGGGTCTCTAGAAAAGGACAGTTGGTAATAGCCC
CGGCGCACTCATGATTGGAATTCTTTGAACCCTCAAAGTGCTTCCGCAGTACTAATCCCC
ACGGCACCAGTGGGTCCACGTCGCTTGAATATTATTTTTTATTTGACCACCAAGATGAGA
TGATGATTCTGTTTCCTTTTGAAAACGGTCTGAGAAAGTGTACAGGTCTAATTCTATATA
CATATTTATACATGTGTATTTTTGTTTATTGTTACATTTTGACATTGGACTTTCTATTAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               33-480, gnl|bosTau2|chr16 (47960293-47960741)
               

               
               33-480, gnl|Hg17|chr1 (181329347-181329794)
               

               
               33-480, gnl|Mm7|chr1 (151815552-151815131)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-480, gnl|bosTau2|chr16 (47960293-47960741)
               

               
               33-480, gnl|Hg17|chr1 (181329347-181329794)
               

               
               33-480, gnl|Mm7|chr1 (151815552-151815131)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               amn (0.417711)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               jej (0.0989218)

	33-480, gnl\|bosTau2\|chr16 (47960293-47960741)
	33-480, gnl\|Hg17\|chr1 (181329347-181329794)
	33-480, gnl\|Mm7\|chr1 (151815552-151815131)