Non-Coding RNA Search

Ss1.1-ramn3538b_b2.5

Sequence:


               
               GGCCAGAGAGGACACACCTCTGCTCCAAGTCCCAGATGGCTCCTGGAGGCCCTGCCAGAG
CACTGGGACCCTCAGGCTTCCGGAGGGAAGAAGCTACGGAGTCTTTTAGAATAAGGTGGG
GCTGCCCAGGTGAGAGGGGGCTTCAAAGCAGGTAGGATGCCTCCTACCACACACTGGGCC
TTCTCACCCAAACTCTGGGCTGGAGGGAAGAAGATGCTGCCCTGCTTCCTTCAGACTGGG
TCTGACTCTGTCATCCTTCCAGCTGACACCGCTTAACTGGCTCCTCATACTGGGAGAGCA
GGAAAATAGGAGGAAGGAGACACAGGCTGAACTAGGAGCTCCTTGCCACTTAGGGGAAAG
CAGAGTCTAGACGGCCAAGGGCCGGCCTCACTTCCCCCTCCCACCACAAGGGGGGGCACA
TCCAGTGTCTGTGCGGACAAGCCCTGGAAACTGGAGGTCCAGGTGTGAGACCCCCTTCTC
CCCTTCTCTGCCATTTCTACTCCTGGACTGTGCCCCTTCCCACAACATGTTCTGGAGTCC
CCTTCCCCTCCAAGGGGCAGAAATCCACCAGAAACCACCCAATATTTGGATTCTCTTCCA
TGGGATCAGGCCAGAGCTATGCCATGGAAACCATAGGCTCCCTTGGTTCACTTATTGGAT
GTTGGAAAGAATAAAACAGATTTCCACGGACTCAGCCCCTGAGTTTCCAACCCCCACTTT
TGTAAAGATACTTTTGTCAGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCAGAGAGGACACACCTCTGCTCCAAGTCCCAGATGGCTCCTGGAGGCCCTGCCAGAG
CACTGGGACCCTCAGGCTTCCGGAGGGAAGAAGCTACGGAGTCTTTTAGAATAAGGTGGG
GCTGCCCAGGTGAGAGGGGGCTTCAAAGCAGGTAGGATGCCTCCTACCACACACTGGGCC
TTCTCACCCAAACTCTGGGCTGGAGGGAAGAAGATGCTGCCCTGCTTCCTTCAGACTGGG
TCTGACTCTGTCATCCTTCCAGCTGACACCGCTTAACTGGCTCCTCATACTGGGAGAGCA
GGAAAATAGGAGGAAGGAGACACAGGCTGAACTAGGAGCTCCTTGCCACTTAGGGGAAAG
CAGAGTCTAGACGGCCAAGGGCCGGCCTCACTTCCCCCTCCCACCACAAGGGGGGGCACA
TCCAGTGTCTGTGCGGACAAGCCCTGGAAACTGGAGGTCCAGGTGTGAGACCCCCTTCTC
CCCTTCTCTGCCATTTCTACTCCTGGACTGTGCCCCTTCCCACAACATGTTCTGGAGTCC
CCTTCCCCTCCAAGGGGCAGAAATCCACCAGAAACCACCCAATATTTGGATTCTCTTCCA
TGGGATCAGGCCAGAGCTATGCCATGGAAACCATAGGCTCCCTTGGTTCACTTATTGGAT
GTTGGAAAGAATAAAACAGATTTCCACGGACTCAGCCCCTGAGTTTCCAACCCCCACTTT
TGTAAAGATACTTTTGTCAGAACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               115-271, - strand, RNAz p=0.991464
               

               
               536-652, - strand, RNAz p=0.989215

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-271, - strand, RNAz p=0.991464
               

               
               536-652, - strand, RNAz p=0.989215

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of AK125944, -
               

               
               5' of AK125944, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK125944, -
               

               
               5' of AK125944, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-742, gnl|bosTau2|chr3 (25384640-25385366)
               

               
               2-742, gnl|Hg17|chr1 (110315335-110314605)
               

               
               2-742, gnl|Mm7|chr3 (107423445-107424109)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-742, gnl|bosTau2|chr3 (25384640-25385366)
               

               
               2-742, gnl|Hg17|chr1 (110315335-110314605)
               

               
               2-742, gnl|Mm7|chr3 (107423445-107424109)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               amn (0.417711)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ute (0.132784)

	115-271, - strand, RNAz p=0.991464
	536-652, - strand, RNAz p=0.989215

	2-742, gnl\|bosTau2\|chr3 (25384640-25385366)
	2-742, gnl\|Hg17\|chr1 (110315335-110314605)
	2-742, gnl\|Mm7\|chr3 (107423445-107424109)