Non-Coding RNA Search

Ss1.1-ramn3538b_o16.5

Sequence:


               
               GGCTGGGGTCTAATCAGAGCTACAGCTGCCGGCCTACACCACAGCCACAGCAACACCAGA
TCCCAGCCGCATCTTCAACCTACACCAAAGCTCACAGCAATGCCGGATCCGCAACCCACT
GAGCAAGGCCAGGGATCAAACCCACAATCTCATGGTTCCTAGTAGGATTCACTTCCACTG
TGCCACAACGGGAACTCCAAAGATAATATTTTCTTATTTTAAGTAACACTCTCACAACAA
TAAGAGAATGATAAGAATTAGGGGAGACTAAACCCATAGTTGGTATTTCTAAGTGGATTC
TAAGAGTTTTTAACGTATTTTTTAAATTTGTTTTTGCCTAAGTTATTTTTAAGAGGTCTG
TATGTAATATTACTTCTTTGGATAATACTAAGTACAAAATAAAATGCTATATATCGTATT
TAAATTGAATTTAACAGGATTATAAACACAAGACAAGACCAAACCTTCTTGATAATCCTC
AAAAATTGCAAAAGTGTATAAACCAGTGTACATGCATAACCTACTTCTTCTTGCTAGCTC
ATGCTGTATATGCAGCAAATAAAACAATGTTAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGGGGTCTAATCAGAGCTACAGCTGCCGGCCTACACCACAGCCACAGCAACACCAGA
TCCCAGCCGCATCTTCAACCTACACCAAAGCTCACAGCAATGCCGGATCCGCAACCCACT
GAGCAAGGCCAGGGATCAAACCCACAATCTCATGGTTCCTAGTAGGATTCACTTCCACTG
TGCCACAACGGGAACTCCAAAGATAATATTTTCTTATTTTAAGTAACACTCTCACAACAA
TAAGAGAATGATAAGAATTAGGGGAGACTAAACCCATAGTTGGTATTTCTAAGTGGATTC
TAAGAGTTTTTAACGTATTTTTTAAATTTGTTTTTGCCTAAGTTATTTTTAAGAGGTCTG
TATGTAATATTACTTCTTTGGATAATACTAAGTACAAAATAAAATGCTATATATCGTATT
TAAATTGAATTTAACAGGATTATAAACACAAGACAAGACCAAACCTTCTTGATAATCCTC
AAAAATTGCAAAAGTGTATAAACCAGTGTACATGCATAACCTACTTCTTCTTGCTAGCTC
ATGCTGTATATGCAGCAAATAAAACAATGTTAAGCA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               269-496, gnl|bosTau2|chr1 (61768368-61768144)
               

               
               269-496, gnl|Hg17|chr3 (172195308-172195080)
               

               
               269-496, gnl|Mm7|chr3 (28546411-28546648)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               269-496, gnl|bosTau2|chr1 (61768368-61768144)
               

               
               269-496, gnl|Hg17|chr3 (172195308-172195080)
               

               
               269-496, gnl|Mm7|chr3 (28546411-28546648)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               amn (0.417711)
               

               
               sin (0.349895)
               

               
               cki (0.165235)
               

               
               lun (0.150489)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               sin (0.349895)
               

               
               cki (0.165235)
               

               
               lun (0.150489)

	269-496, gnl\|bosTau2\|chr1 (61768368-61768144)
	269-496, gnl\|Hg17\|chr3 (172195308-172195080)
	269-496, gnl\|Mm7\|chr3 (28546411-28546648)