Non-Coding RNA Search

Ss1.1-ramn3539b_n19.5

Sequence:


               
               GGAAACCACAGCCTTGCCAGCACCCAGCCCAGCACCAGCCCAGCTATGGCATCCCCATTG
CCTGTCCGGACCTTGCCCTTGATCCTGATTCTGCTGGCTGTCCTGGCTCCTGGGGCTTCA
GCCAACTTCAACATCTCAAGCCTCTCTGGTCTGCTGTCCCCTGCGTTAACTGAGAGCCTG
CTAGTTGCCTTGCCCCCCTGTCACCTCACAGGGGGTAACGCCACACTGATGGTCCGGAGA
GCCAACGACAGCAAAGTGGTGAAATCTAGCTTCATGGTGCCTCCATGCCGTGGACGCAGG
GAGCTGGTGAGTGTAGTGGACAGTGGGTCTGGCTTCACAGTCACCCGGCTCAGTGCATAC
CAGGTGACCAACCTTGTGCCAGGAACCAAATACTACATCTCCTACCTAGTGACAAAGGGG
GCATCCACGGAGTCCAGTAGAGAGATCCCAATGTCCACGCTTCCTCGAAGGAAGGCGGAA
GCCATTGGGCTGGGAATGGCCCGGACAGGGGGCCATGGTGGTCATCACAGTGCTGCTCTC
TGTCGCCATGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAACCACAGCCTTGCCAGCACCCAGCCCAGCACCAGCCCAGCTATGGCATCCCCATTG
CCTGTCCGGACCTTGCCCTTGATCCTGATTCTGCTGGCTGTCCTGGCTCCTGGGGCTTCA
GCCAACTTCAACATCTCAAGCCTCTCTGGTCTGCTGTCCCCTGCGTTAACTGAGAGCCTG
CTAGTTGCCTTGCCCCCCTGTCACCTCACAGGGGGTAACGCCACACTGATGGTCCGGAGA
GCCAACGACAGCAAAGTGGTGAAATCTAGCTTCATGGTGCCTCCATGCCGTGGACGCAGG
GAGCTGGTGAGTGTAGTGGACAGTGGGTCTGGCTTCACAGTCACCCGGCTCAGTGCATAC
CAGGTGACCAACCTTGTGCCAGGAACCAAATACTACATCTCCTACCTAGTGACAAAGGGG
GCATCCACGGAGTCCAGTAGAGAGATCCCAATGTCCACGCTTCCTCGAAGGAAGGCGGAA
GCCATTGGGCTGGGAATGGCCCGGACAGGGGGCCATGGTGGTCATCACAGTGCTGCTCTC
TGTCGCCATGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2696120|dbj|BAA23884.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2696120|dbj|BAA23884.1|

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               255-395, gnl|bosTau2|chr15 (14158643-14158783)
               

               
               255-395, gnl|canFam2|chr5 (17875953-17875461)
               

               
               255-395, gnl|dasNov1|scaffold_41408 (42066-42618)
               

               
               255-395, gnl|echTel1|scaffold_210415 (5053-4601)
               

               
               255-395, gnl|hg17|chr11 (118332921-118333482)
               

               
               255-395, gnl|Hg17|chr11 (118333126-118333266)
               

               
               255-395, gnl|loxAfr1|scaffold_41844 (1582-2141)
               

               
               255-395, gnl|mm7|chr9 (44388422-44387936)
               

               
               255-395, gnl|Mm7|chr9 (44388280-44388140)
               

               
               255-395, gnl|monDom2|scaffold_2 (119702074-119701529)
               

               
               255-395, gnl|panTro1|chr9_random (4496438-4495877)
               

               
               255-395, gnl|rheMac2|chr14 (117363763-117364306)
               

               
               255-395, gnl|rn3|chr8 (47430776-47430291)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               255-395, gnl|bosTau2|chr15 (14158643-14158783)
               

               
               255-395, gnl|canFam2|chr5 (17875953-17875461)
               

               
               255-395, gnl|dasNov1|scaffold_41408 (42066-42618)
               

               
               255-395, gnl|echTel1|scaffold_210415 (5053-4601)
               

               
               255-395, gnl|hg17|chr11 (118332921-118333482)
               

               
               255-395, gnl|Hg17|chr11 (118333126-118333266)
               

               
               255-395, gnl|loxAfr1|scaffold_41844 (1582-2141)
               

               
               255-395, gnl|mm7|chr9 (44388422-44387936)
               

               
               255-395, gnl|Mm7|chr9 (44388280-44388140)
               

               
               255-395, gnl|monDom2|scaffold_2 (119702074-119701529)
               

               
               255-395, gnl|panTro1|chr9_random (4496438-4495877)
               

               
               255-395, gnl|rheMac2|chr14 (117363763-117364306)
               

               
               255-395, gnl|rn3|chr8 (47430776-47430291)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               amn (0.417711)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)

	255-395, gnl\|bosTau2\|chr15 (14158643-14158783)
	255-395, gnl\|canFam2\|chr5 (17875953-17875461)
	255-395, gnl\|dasNov1\|scaffold_41408 (42066-42618)
	255-395, gnl\|echTel1\|scaffold_210415 (5053-4601)
	255-395, gnl\|hg17\|chr11 (118332921-118333482)
	255-395, gnl\|Hg17\|chr11 (118333126-118333266)
	255-395, gnl\|loxAfr1\|scaffold_41844 (1582-2141)
	255-395, gnl\|mm7\|chr9 (44388422-44387936)
	255-395, gnl\|Mm7\|chr9 (44388280-44388140)
	255-395, gnl\|monDom2\|scaffold_2 (119702074-119701529)
	255-395, gnl\|panTro1\|chr9_random (4496438-4495877)
	255-395, gnl\|rheMac2\|chr14 (117363763-117364306)
	255-395, gnl\|rn3\|chr8 (47430776-47430291)