Non-Coding RNA Search

Ss1.1-raor001_b11.5

Sequence:


               
               CAGATGCATGCCACTTTCAGTAGCTGCCAAATGTGCCTTTAATTAAGAACATCTCTAATT
TTTTTCTTCAGATCAAGTCAGCATTTGGGGGTGGGATCAGGGCAGGGGATTTGGGGGTGC
AAATATCTGGTGAAACCCACCAGAGAAGAAGCCTTTGTTGTCAAAGTGACATGTATAACT
TCAGTTGAAACATGTTTGTGTATATATATATATTTTATATATATATGTATATATATGCAT
ATATATATATACATATATATGTATATATGTATTTGCCTTTGTTTAGTAGCATGGTTATTT
GCTAAAATAATTGTCCAAAAAATTGCTCTGTCAGTCTTACTTTGATGTAAAAACAAAGTT
CGGTCTCCACATCTAATACAGCCTTTGTACCTAACCATGTTCGTAGGTAATTTTTGTACT
CTGTGCAGCAGTACTCAGTTTGCATTTAAAGTGAAAATAATGGCTGTTATTTTTCTGGCA
TTACTAAGATAAACCGAAAAATAATAAAAATGCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATGCATGCCACTTTCAGTAGCTGCCAAATGTGCCTTTAATTAAGAACATCTCTAATT
TTTTTCTTCAGATCAAGTCAGCATTTGGGGGTGGGATCAGGGCAGGGGATTTGGGGGTGC
AAATATCTGGTGAAACCCACCAGAGAAGAAGCCTTTGTTGTCAAAGTGACATGTATAACT
TCAGTTGAAACATGTTTGTGTATATATATATATTTTATATATATATGTATATATATGCAT
ATATATATATACATATATATGTATATATGTATTTGCCTTTGTTTAGTAGCATGGTTATTT
GCTAAAATAATTGTCCAAAAAATTGCTCTGTCAGTCTTACTTTGATGTAAAAACAAAGTT
CGGTCTCCACATCTAATACAGCCTTTGTACCTAACCATGTTCGTAGGTAATTTTTGTACT
CTGTGCAGCAGTACTCAGTTTGCATTTAAAGTGAAAATAATGGCTGTTATTTTTCTGGCA
TTACTAAGATAAACCGAAAAATAATAAAAATGCCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7PKG0_ANOGA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7PKG0_ANOGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               98-216, + strand, RNAz p=0.721771

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               98-216, + strand, RNAz p=0.721771

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-216, gnl|bosTau2|chr11 (15794495-15794712)
               

               
               1-216, gnl|canFam2|chr17 (34108251-34109101)
               

               
               1-216, gnl|echTel1|scaffold_205468 (2249-3072)
               

               
               1-216, gnl|galGal2|chrUn (121244525-121245340)
               

               
               1-216, gnl|hg17|chr2 (39120557-39121389)
               

               
               1-216, gnl|Hg17|chr2 (39120809-39120602)
               

               
               1-216, gnl|loxAfr1|scaffold_11207 (57332-58172)
               

               
               1-216, gnl|mm7|chr17 (78689940-78690768)
               

               
               1-216, gnl|Mm7|chr17 (78690195-78689985)
               

               
               1-216, gnl|monDom2|scaffold_23 (42254449-42255333)
               

               
               1-216, gnl|oryCun1|scaffold_182344 (5738-4911)
               

               
               1-216, gnl|panTro1|chr12 (40615975-40616810)
               

               
               1-216, gnl|rheMac2|chr13 (38969247-38970071)
               

               
               1-216, gnl|rn3|chr6 (3306857-3307621)
               


               
               258-508, gnl|bosTau2|chr11 (15794697-15794946)
               

               
               258-508, gnl|Hg17|chr2 (39120615-39120366)
               

               
               258-508, gnl|Mm7|chr17 (78689998-78689751)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-216, gnl|bosTau2|chr11 (15794495-15794712)
               

               
               1-216, gnl|canFam2|chr17 (34108251-34109101)
               

               
               1-216, gnl|echTel1|scaffold_205468 (2249-3072)
               

               
               1-216, gnl|galGal2|chrUn (121244525-121245340)
               

               
               1-216, gnl|hg17|chr2 (39120557-39121389)
               

               
               1-216, gnl|Hg17|chr2 (39120809-39120602)
               

               
               1-216, gnl|loxAfr1|scaffold_11207 (57332-58172)
               

               
               1-216, gnl|mm7|chr17 (78689940-78690768)
               

               
               1-216, gnl|Mm7|chr17 (78690195-78689985)
               

               
               1-216, gnl|monDom2|scaffold_23 (42254449-42255333)
               

               
               1-216, gnl|oryCun1|scaffold_182344 (5738-4911)
               

               
               1-216, gnl|panTro1|chr12 (40615975-40616810)
               

               
               1-216, gnl|rheMac2|chr13 (38969247-38970071)
               

               
               1-216, gnl|rn3|chr6 (3306857-3307621)
               


               
               258-508, gnl|bosTau2|chr11 (15794697-15794946)
               

               
               258-508, gnl|Hg17|chr2 (39120615-39120366)
               

               
               258-508, gnl|Mm7|chr17 (78689998-78689751)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               rec (0.17307)
               

               
               lyg (0.133103)
               

               
               tra (0.123092)

	1-216, gnl\|bosTau2\|chr11 (15794495-15794712)
	1-216, gnl\|canFam2\|chr17 (34108251-34109101)
	1-216, gnl\|echTel1\|scaffold_205468 (2249-3072)
	1-216, gnl\|galGal2\|chrUn (121244525-121245340)
	1-216, gnl\|hg17\|chr2 (39120557-39121389)
	1-216, gnl\|Hg17\|chr2 (39120809-39120602)
	1-216, gnl\|loxAfr1\|scaffold_11207 (57332-58172)
	1-216, gnl\|mm7\|chr17 (78689940-78690768)
	1-216, gnl\|Mm7\|chr17 (78690195-78689985)
	1-216, gnl\|monDom2\|scaffold_23 (42254449-42255333)
	1-216, gnl\|oryCun1\|scaffold_182344 (5738-4911)
	1-216, gnl\|panTro1\|chr12 (40615975-40616810)
	1-216, gnl\|rheMac2\|chr13 (38969247-38970071)
	1-216, gnl\|rn3\|chr6 (3306857-3307621)

	258-508, gnl\|bosTau2\|chr11 (15794697-15794946)
	258-508, gnl\|Hg17\|chr2 (39120615-39120366)
	258-508, gnl\|Mm7\|chr17 (78689998-78689751)

	fce (0.271592)
	fcc (0.197785)
	aor (0.195274)
	rec (0.17307)
	lyg (0.133103)
	tra (0.123092)