Non-Coding RNA Search

Ss1.1-raor001_k16.5

Sequence:


               
               AATCTGGGAAGCAGGTGTGATTACTTTTTTGCTCGTAGATGTTGTCCTAAGTTGAAATTC
TCCCACTGCCCTAAAATTTCCCCTAGTAGCCCTTTAAATCCCTCACCCACCTTTTTGGTA
GCTGTGTTTCTCCACCCCCTTCTCCACCTCCCCTTTTATCTAGGAGCTGTTTTTAGCACG
ATTTTTTTTTAACAGTTTATATTGTACAGGATCAATATTTTGCTTTTTAACAAGGATATT
TATGTAATAAGAAACTTTGCCTTAGGCAGGTGTTGGCCAGAAAAGTCCAGATTCCTCTGG
GACCCCACCCTGGCCTCTCCTGGAGCTCTGAACCTGCTGTGGAAGGAATTGGCTGTGGCC
TCACCACTGGACAGTAGGGTCTGAGGCGAGGGAAAGGCGTGTACTGGTTCTGACAGGAGA
AGAATCTACCGTGGTAATCTAGTGCCTCTATGGAGGGGTTCGGAAGAAGCACTCCAGTTC
CGTTTCTTCAGATGTAAGTCACCTTCCTTAGCTGATTCTCCCCATAATGCACCTCTCCAC
CTCTTACTGTTTGGCACTAGAACTCCTGAAACACCACTTCATGCACCTCCCTCCCTGCCA
GTGGTCACGGCTTTGGAGCCACTCTTTCGTAACGCCAGATTATTTAAAGAGAGAAAAATA
CAAGACAAAACCTTCTAGCACTTTGTAAACACAGTGAATAACCTCTTGGAGTATTTTTGG
CTTTATATAAAACAAGGTTTTTAATTGTAAAATATAAGTGCCATTAGAAAATGCACAGGG
CCTATCTTTGTTAAAGTAGATTTTTCAATGTTTTACAGAATTACATTTTCCAAAAAAAAA
AAGTTTTTATAATGAAGTTGTTTATTAAAAACTTCTGAATGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCTGGGAAGCAGGTGTGATTACTTTTTTGCTCGTAGATGTTGTCCTAAGTTGAAATTC
TCCCACTGCCCTAAAATTTCCCCTAGTAGCCCTTTAAATCCCTCACCCACCTTTTTGGTA
GCTGTGTTTCTCCACCCCCTTCTCCACCTCCCCTTTTATCTAGGAGCTGTTTTTAGCACG
ATTTTTTTTTAACAGTTTATATTGTACAGGATCAATATTTTGCTTTTTAACAAGGATATT
TATGTAATAAGAAACTTTGCCTTAGGCAGGTGTTGGCCAGAAAAGTCCAGATTCCTCTGG
GACCCCACCCTGGCCTCTCCTGGAGCTCTGAACCTGCTGTGGAAGGAATTGGCTGTGGCC
TCACCACTGGACAGTAGGGTCTGAGGCGAGGGAAAGGCGTGTACTGGTTCTGACAGGAGA
AGAATCTACCGTGGTAATCTAGTGCCTCTATGGAGGGGTTCGGAAGAAGCACTCCAGTTC
CGTTTCTTCAGATGTAAGTCACCTTCCTTAGCTGATTCTCCCCATAATGCACCTCTCCAC
CTCTTACTGTTTGGCACTAGAACTCCTGAAACACCACTTCATGCACCTCCCTCCCTGCCA
GTGGTCACGGCTTTGGAGCCACTCTTTCGTAACGCCAGATTATTTAAAGAGAGAAAAATA
CAAGACAAAACCTTCTAGCACTTTGTAAACACAGTGAATAACCTCTTGGAGTATTTTTGG
CTTTATATAAAACAAGGTTTTTAATTGTAAAATATAAGTGCCATTAGAAAATGCACAGGG
CCTATCTTTGTTAAAGTAGATTTTTCAATGTTTTACAGAATTACATTTTCCAAAAAAAAA
AAGTTTTTATAATGAAGTTGTTTATTAAAAACTTCTGAATGAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               274-392, + strand, RNAz p=0.680991

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-392, + strand, RNAz p=0.680991

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002657, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002657, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-882, gnl|bosTau2|chr13 (42348296-42349178)
               

               
               1-882, gnl|Hg17|chr20 (30244814-30243974)
               

               
               1-882, gnl|Mm7|chr2 (152969424-152968626)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-882, gnl|bosTau2|chr13 (42348296-42349178)
               

               
               1-882, gnl|Hg17|chr20 (30244814-30243974)
               

               
               1-882, gnl|Mm7|chr2 (152969424-152968626)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cte (0.58548)
               

               
               cje (0.330469)
               

               
               che (0.272628)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               nbm (0.0993246)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               cje (0.330469)
               

               
               che (0.272628)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               nbm (0.0993246)

	1-882, gnl\|bosTau2\|chr13 (42348296-42349178)
	1-882, gnl\|Hg17\|chr20 (30244814-30243974)
	1-882, gnl\|Mm7\|chr2 (152969424-152968626)

	cte (0.58548)
	cje (0.330469)
	che (0.272628)
	ece (0.229305)
	aor (0.195274)
	csp (0.161186)
	tbr (0.154178)
	spl (0.143184)
	nbm (0.0993246)