Non-Coding RNA Search

Ss1.1-raor011_i3.5

Sequence:


               
               TGGAGCCGTCCCTCATTCGTGGTTGCTTTATTAGCTGTAAATTCCCATTCCCCAGCTCAG
ACCCAACCATCTTAGATGGGTAGAAGTTACGGCCACTTGAAAACATCAGCTTTGATTGGG
CACACTAGGTGAGGACGACTCCAGTCCTTTGTCAGAGCTGACAACCCCTTAAACCCTTGC
TTAAAAATACAGTATTAGTCTAATTGAGTAATTAGTGCAATTTCCTGCTTACTTTTCATT
CTCATGACTGAGCTGTGATTAGGAGGTTGTGATTATAGATTCTTGTTTGGGCCAGAATTT
TGAATCAGCATTAATTGAATTGCTAGATGACTGACATTCATTCCATTTAATTGGGGGAGC
AAAAGACCTCAGGTAAGCATAAGGAACTCTGAAATCATCAGGAAAAGGAAAAAGAGCCTT
GTTAATTTTTATGGTCTGTGATCTGTAGCTGTGATAAGGGACTAAGGAATAAATTGTGCT
CTTTGTCATGGCAACCAGCTTCTGAAAAGCCAGCTGAAAATTGCCTATCCTTAGGTGGTT
ATTGCTGCTGGGTAAGATTTGTCTTAACGGGACTATTTTCTCGCCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGCCGTCCCTCATTCGTGGTTGCTTTATTAGCTGTAAATTCCCATTCCCCAGCTCAG
ACCCAACCATCTTAGATGGGTAGAAGTTACGGCCACTTGAAAACATCAGCTTTGATTGGG
CACACTAGGTGAGGACGACTCCAGTCCTTTGTCAGAGCTGACAACCCCTTAAACCCTTGC
TTAAAAATACAGTATTAGTCTAATTGAGTAATTAGTGCAATTTCCTGCTTACTTTTCATT
CTCATGACTGAGCTGTGATTAGGAGGTTGTGATTATAGATTCTTGTTTGGGCCAGAATTT
TGAATCAGCATTAATTGAATTGCTAGATGACTGACATTCATTCCATTTAATTGGGGGAGC
AAAAGACCTCAGGTAAGCATAAGGAACTCTGAAATCATCAGGAAAAGGAAAAAGAGCCTT
GTTAATTTTTATGGTCTGTGATCTGTAGCTGTGATAAGGGACTAAGGAATAAATTGTGCT
CTTTGTCATGGCAACCAGCTTCTGAAAAGCCAGCTGAAAATTGCCTATCCTTAGGTGGTT
ATTGCTGCTGGGTAAGATTTGTCTTAACGGGACTATTTTCTCGCCACC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               147-306, + strand, RNAz p=0.993276
               

               
               384-502, - strand, RNAz p=0.908034

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-306, + strand, RNAz p=0.993276
               

               
               384-502, - strand, RNAz p=0.908034

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               421-500, + strand, RNAmicro p=0.995475

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               421-500, + strand, RNAmicro p=0.995475

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC056162, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC056162, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-588, gnl|bosTau2|chr4 (50699759-50700358)
               

               
               1-588, gnl|canFam2|chr14 (9506481-9505676)
               

               
               1-588, gnl|dasNov1|scaffold_3310 (12549-13301)
               

               
               1-588, gnl|echTel1|scaffold_312905 (87481-86729)
               

               
               1-588, gnl|hg17|chr7 (129631190-129631950)
               

               
               1-588, gnl|Hg17|chr7 (129631913-129631326)
               

               
               1-588, gnl|loxAfr1|scaffold_31177 (15838-15136)
               

               
               1-588, gnl|mm7|chr6 (30586414-30587170)
               

               
               1-588, gnl|Mm7|chr6 (30587128-30586542)
               

               
               1-588, gnl|monDom2|scaffold_22 (14031480-14030837)
               

               
               1-588, gnl|oryCun1|scaffold_166228 (10690-9950)
               

               
               1-588, gnl|panTro1|chr6 (132104535-132105291)
               

               
               1-588, gnl|rheMac2|chr3 (167781896-167782633)
               

               
               1-588, gnl|rn3|chr4 (57840321-57841077)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-588, gnl|bosTau2|chr4 (50699759-50700358)
               

               
               1-588, gnl|canFam2|chr14 (9506481-9505676)
               

               
               1-588, gnl|dasNov1|scaffold_3310 (12549-13301)
               

               
               1-588, gnl|echTel1|scaffold_312905 (87481-86729)
               

               
               1-588, gnl|hg17|chr7 (129631190-129631950)
               

               
               1-588, gnl|Hg17|chr7 (129631913-129631326)
               

               
               1-588, gnl|loxAfr1|scaffold_31177 (15838-15136)
               

               
               1-588, gnl|mm7|chr6 (30586414-30587170)
               

               
               1-588, gnl|Mm7|chr6 (30587128-30586542)
               

               
               1-588, gnl|monDom2|scaffold_22 (14031480-14030837)
               

               
               1-588, gnl|oryCun1|scaffold_166228 (10690-9950)
               

               
               1-588, gnl|panTro1|chr6 (132104535-132105291)
               

               
               1-588, gnl|rheMac2|chr3 (167781896-167782633)
               

               
               1-588, gnl|rn3|chr4 (57840321-57841077)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               aor (0.195274)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               thg (0.126791)

	147-306, + strand, RNAz p=0.993276
	384-502, - strand, RNAz p=0.908034

	1-588, gnl\|bosTau2\|chr4 (50699759-50700358)
	1-588, gnl\|canFam2\|chr14 (9506481-9505676)
	1-588, gnl\|dasNov1\|scaffold_3310 (12549-13301)
	1-588, gnl\|echTel1\|scaffold_312905 (87481-86729)
	1-588, gnl\|hg17\|chr7 (129631190-129631950)
	1-588, gnl\|Hg17\|chr7 (129631913-129631326)
	1-588, gnl\|loxAfr1\|scaffold_31177 (15838-15136)
	1-588, gnl\|mm7\|chr6 (30586414-30587170)
	1-588, gnl\|Mm7\|chr6 (30587128-30586542)
	1-588, gnl\|monDom2\|scaffold_22 (14031480-14030837)
	1-588, gnl\|oryCun1\|scaffold_166228 (10690-9950)
	1-588, gnl\|panTro1\|chr6 (132104535-132105291)
	1-588, gnl\|rheMac2\|chr3 (167781896-167782633)
	1-588, gnl\|rn3\|chr4 (57840321-57841077)