Non-Coding RNA Search

Ss1.1-raor015_a12.5

Sequence:


               
               GCTGTTTGAGGGGGCTTTTTACTTATTTCTGCATTATTCAAATGAGGCCGGGCTTGATAT
TTTATTAGTCTTCTGTGGACAAGAAGTTACATAATATATCCTTAAGAGGTAAATTCTGCC
AAAGGCCTAGCACCACCTTGGGGGCTGCAATAAATACTTTAAAGAAAAATTTTAAAAAAA
GCCTTCATTTTATTTTCTTATTGTCTCTATTCAAGGTGTATTAAGGCTTTTTTTGAGTCA
TGATATTCTCCCTTTTGGGTTGGTATGTGTGTGACACCATCCTCTTAAGTGCTGTGTGCT
GGTAAATTTTTTTCTAACTAAAATGGACTGAAAACTTACTGTAAATACCTAATGATATTA
GAGGTCATTGCTTTGGGTCTTTGGTTTCTTAACTCTTCCGTGCTCAAAACAGGGAAATTC
CCTTGGACTCTATCAATTAAAATGGTTTATATGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGTTTGAGGGGGCTTTTTACTTATTTCTGCATTATTCAAATGAGGCCGGGCTTGATAT
TTTATTAGTCTTCTGTGGACAAGAAGTTACATAATATATCCTTAAGAGGTAAATTCTGCC
AAAGGCCTAGCACCACCTTGGGGGCTGCAATAAATACTTTAAAGAAAAATTTTAAAAAAA
GCCTTCATTTTATTTTCTTATTGTCTCTATTCAAGGTGTATTAAGGCTTTTTTTGAGTCA
TGATATTCTCCCTTTTGGGTTGGTATGTGTGTGACACCATCCTCTTAAGTGCTGTGTGCT
GGTAAATTTTTTTCTAACTAAAATGGACTGAAAACTTACTGTAAATACCTAATGATATTA
GAGGTCATTGCTTTGGGTCTTTGGTTTCTTAACTCTTCCGTGCTCAAAACAGGGAAATTC
CCTTGGACTCTATCAATTAAAATGGTTTATATGACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               116-229, + strand, RNAz p=0.627512

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-229, + strand, RNAz p=0.627512

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-456, gnl|bosTau2|chr24 (33022812-33023254)
               

               
               1-456, gnl|Hg17|chr18 (46864195-46864694)
               

               
               1-456, gnl|Mm7|chr18 (74030257-74029803)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-456, gnl|bosTau2|chr24 (33022812-33023254)
               

               
               1-456, gnl|Hg17|chr18 (46864195-46864694)
               

               
               1-456, gnl|Mm7|chr18 (74030257-74029803)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               aor (0.195274)
               

               
               hlv (0.139256)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               hlv (0.139256)

	1-456, gnl\|bosTau2\|chr24 (33022812-33023254)
	1-456, gnl\|Hg17\|chr18 (46864195-46864694)
	1-456, gnl\|Mm7\|chr18 (74030257-74029803)