Non-Coding RNA Search

Ss1.1-raor015_c15.5

Sequence:


               
               GCAGTCCCAAGT------------TTGGTATGGTGAACAGTGCTCATGTGGTAGATGGAT
AACACCTGCTTTTCAAATACATAAGAATAGAGTGGATGAAATGAAAACGCTGCCAGTTTT
GGGACCACAAACGAGAAAGACATGAACTTGTGCCATTTGATAACTTGGGAAGAAACTTGC
TGAGGATATGTGTTACCCTTGCTTGTTGTCATTCATGGCAGATTGTCTAGTTTTATAGGC
CATCAGCATTTCATTTGAAATGTGAGAAAAACTCAATATGGGCGCAGCAGAAATGAATCT
GACTAGGAACCATGAGGTTATGGGTTTGTTCCCTGGCCTGGCTCAGTGGATTAAGGATCT
GGCGTTGCCATGAGCTGTGGTGTAGGTTGCAGACGAGGCTTGGATCTGGCATTGCTGGGG
CTCTGGCATAGGCCAGCAGCTGTAGCTCTGATTTGACCCCTAGCCTTGGAACCTCCATAT
GCCACAGGTGTGGCCCTAAAAAGCTAAAATAAAATAAAAACTTTTTAATCATGTAAATTA
TATTTTATTTGATATTAAAATCTACAGGAACTCCCAAATTAGCTTTTCAGTGTGTTCTTT
GGAGACTGGAATTTATTTTACTCATTGCTGATAGTTAGAATTGTGCCTAATTAGATATGT
GAACATTTACATGAAATCAGAATTATCTAATAAAGAGAAATATAGTACATGTTCATAACA
TATTTTTCATATGTGAGTATATCCATATGTACATAACACCAAAATGAGAATTATCTTAAA
TGCAAAAATAAGCGTGAATAATGATCTTTAAAAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTCCCAAGT------------TTGGTATGGTGAACAGTGCTCATGTGGTAGATGGAT
AACACCTGCTTTTCAAATACATAAGAATAGAGTGGATGAAATGAAAACGCTGCCAGTTTT
GGGACCACAAACGAGAAAGACATGAACTTGTGCCATTTGATAACTTGGGAAGAAACTTGC
TGAGGATATGTGTTACCCTTGCTTGTTGTCATTCATGGCAGATTGTCTAGTTTTATAGGC
CATCAGCATTTCATTTGAAATGTGAGAAAAACTCAATATGGGCGCAGCAGAAATGAATCT
GACTAGGAACCATGAGGTTATGGGTTTGTTCCCTGGCCTGGCTCAGTGGATTAAGGATCT
GGCGTTGCCATGAGCTGTGGTGTAGGTTGCAGACGAGGCTTGGATCTGGCATTGCTGGGG
CTCTGGCATAGGCCAGCAGCTGTAGCTCTGATTTGACCCCTAGCCTTGGAACCTCCATAT
GCCACAGGTGTGGCCCTAAAAAGCTAAAATAAAATAAAAACTTTTTAATCATGTAAATTA
TATTTTATTTGATATTAAAATCTACAGGAACTCCCAAATTAGCTTTTCAGTGTGTTCTTT
GGAGACTGGAATTTATTTTACTCATTGCTGATAGTTAGAATTGTGCCTAATTAGATATGT
GAACATTTACATGAAATCAGAATTATCTAATAAAGAGAAATATAGTACATGTTCATAACA
TATTTTTCATATGTGAGTATATCCATATGTACATAACACCAAAATGAGAATTATCTTAAA
TGCAAAAATAAGCGTGAATAATGATCTTTAAAAGTG

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               14-256, gnl|bosTau2|chr3 (18985380-18985154)
               

               
               14-256, gnl|Hg17|chr1 (158458276-158458508)
               

               
               14-256, gnl|Mm7|chr1 (170851004-170850792)
               


               
               562-802, gnl|bosTau2|chr3 (18984413-18984172)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-256, gnl|bosTau2|chr3 (18985380-18985154)
               

               
               14-256, gnl|Hg17|chr1 (158458276-158458508)
               

               
               14-256, gnl|Mm7|chr1 (170851004-170850792)
               


               
               562-802, gnl|bosTau2|chr3 (18984413-18984172)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               aor (0.390549)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.390549)

	14-256, gnl\|bosTau2\|chr3 (18985380-18985154)
	14-256, gnl\|Hg17\|chr1 (158458276-158458508)
	14-256, gnl\|Mm7\|chr1 (170851004-170850792)

	562-802, gnl\|bosTau2\|chr3 (18984413-18984172)