Non-Coding RNA Search

Ss1.1-raor017_i21.5

Sequence:


               
               TTGCAAGAAGAGTTGAACTATTTTTGATAACAAGAGTAAATGGTGGAAAATGCTTCTTAG
TTGTCTTGTCTTTATTTGCTTTCTAAGTTTTGGAATTTTATTTAATTCCTCTAAGTGTTA
GCAGTGTCTTATGAAACATGTATTTGCCTAAAATTTGTAACAGTTTTGTGTTGGACCCAG
ATGCCCTGCTATATATAAACTTGTAAATCTGTTCTTTAATCACTAATGATCACTGCAAAA
ATGACTAGAAATGAGATTGTACACATGGATGATCAGGATATATTTTGCAAATGTCCCAAA
CTTTCCTAATATTATGATCTTAAAATTCCTAGAGTACTTTATTGCTTCCCAAGTTTGATA
ATCTTAGTTTTGTGTTTTTTGATGCATGGGAGGTTGGCAATATAGACAGAAGTGGAAATC
ATTAGTATGTGAGGGCCTTGATTGTTATGTAATATTGCCAATGATGAATTCAGGTTGTTT
TTAGCACAAGTTTCTCTTTTTTATGCTGGTATTCTCACTGCCACACTTTTGGAAACCTGT
ATTACACCTTAAATCTATCAATAAATGTTAGTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCAAGAAGAGTTGAACTATTTTTGATAACAAGAGTAAATGGTGGAAAATGCTTCTTAG
TTGTCTTGTCTTTATTTGCTTTCTAAGTTTTGGAATTTTATTTAATTCCTCTAAGTGTTA
GCAGTGTCTTATGAAACATGTATTTGCCTAAAATTTGTAACAGTTTTGTGTTGGACCCAG
ATGCCCTGCTATATATAAACTTGTAAATCTGTTCTTTAATCACTAATGATCACTGCAAAA
ATGACTAGAAATGAGATTGTACACATGGATGATCAGGATATATTTTGCAAATGTCCCAAA
CTTTCCTAATATTATGATCTTAAAATTCCTAGAGTACTTTATTGCTTCCCAAGTTTGATA
ATCTTAGTTTTGTGTTTTTTGATGCATGGGAGGTTGGCAATATAGACAGAAGTGGAAATC
ATTAGTATGTGAGGGCCTTGATTGTTATGTAATATTGCCAATGATGAATTCAGGTTGTTT
TTAGCACAAGTTTCTCTTTTTTATGCTGGTATTCTCACTGCCACACTTTTGGAAACCTGT
ATTACACCTTAAATCTATCAATAAATGTTAGTTTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               436-555, + strand, RNAz p=0.515369

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               436-555, + strand, RNAz p=0.515369

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-576, gnl|bosTau2|chr1 (85985704-85986279)
               

               
               1-576, gnl|Hg17|chr3 (137351039-137350465)
               

               
               1-576, gnl|Mm7|chr9 (100793741-100794295)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr1 (85985704-85986279)
               

               
               1-576, gnl|Hg17|chr3 (137351039-137350465)
               

               
               1-576, gnl|Mm7|chr9 (100793741-100794295)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               aor (0.195274)
               

               
               sin (0.174948)
               

               
               bfe (0.149858)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               bfe (0.149858)

	1-576, gnl\|bosTau2\|chr1 (85985704-85986279)
	1-576, gnl\|Hg17\|chr3 (137351039-137350465)
	1-576, gnl\|Mm7\|chr9 (100793741-100794295)