Non-Coding RNA Search

Ss1.1-raor021_h21.5

Sequence:


               
               GCTTTATGGAGCCTGCTTAAGCATATGACTGTACAGGAAGATCATGGCCACTGCCGGTAG
ATGCTGATGACACGTCATGAGAGGCTGAAATGGGTCATGGATCTGTGAGAGAGCTCTGAT
TTCTCCTTGGAGCATGTTCATAACAGTTTTGATCATCTTATCTGTTCTTCAACTTTGCAT
TTTTATTTTGATTTTATCTCCATTCTTCTCTGAGAAACACACTGTCATTTATGTGGCAGG
GTCCTTGCTTTATTCTAACAACATACATATGTCTAAAGGAGGTTGTGTGGTTCACATGTT
TCATCTTTTTAAAAAGACGTTCAGAGAGGTGGTATTTACCTTCCCAAGGCTGGAAAGCAT
GGGGAATTGCCCGACTTCCTAATTCTCTACCAGAGGAATATGTGTAAGTAGAAAAGTCAT
TAACTACTTACATCTATTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATGTACATAT
TTAAGAAATTGTGTGTGAAAGAGCGGCATACTGATTTTCATGAGAATGTTTTGGGATGTA
AATGTAATACTACATTATAGGCAAAGGCCTCCCTGCATTTGAAGAGCAGGTTTTCATTTA
TATATGTATTTTTGGAATAAAAAATAATAAAATTTGTAAATATAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTATGGAGCCTGCTTAAGCATATGACTGTACAGGAAGATCATGGCCACTGCCGGTAG
ATGCTGATGACACGTCATGAGAGGCTGAAATGGGTCATGGATCTGTGAGAGAGCTCTGAT
TTCTCCTTGGAGCATGTTCATAACAGTTTTGATCATCTTATCTGTTCTTCAACTTTGCAT
TTTTATTTTGATTTTATCTCCATTCTTCTCTGAGAAACACACTGTCATTTATGTGGCAGG
GTCCTTGCTTTATTCTAACAACATACATATGTCTAAAGGAGGTTGTGTGGTTCACATGTT
TCATCTTTTTAAAAAGACGTTCAGAGAGGTGGTATTTACCTTCCCAAGGCTGGAAAGCAT
GGGGAATTGCCCGACTTCCTAATTCTCTACCAGAGGAATATGTGTAAGTAGAAAAGTCAT
TAACTACTTACATCTATTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATGTACATAT
TTAAGAAATTGTGTGTGAAAGAGCGGCATACTGATTTTCATGAGAATGTTTTGGGATGTA
AATGTAATACTACATTATAGGCAAAGGCCTCCCTGCATTTGAAGAGCAGGTTTTCATTTA
TATATGTATTTTTGGAATAAAAAATAATAAAATTTGTAAATATAACCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               324-521, + strand, RNAz p=0.999831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               324-521, + strand, RNAz p=0.999831

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_024700, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024700, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               27-647, gnl|bosTau2|chr3 (75765966-75766570)
               

               
               27-647, gnl|Hg17|chr1 (37671809-37671232)
               

               
               27-647, gnl|Mm7|chr4 (124518141-124518686)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-647, gnl|bosTau2|chr3 (75765966-75766570)
               

               
               27-647, gnl|Hg17|chr1 (37671809-37671232)
               

               
               27-647, gnl|Mm7|chr4 (124518141-124518686)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               cbl (0.114797)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               vin (0.332557)
               

               
               mas (0.210305)
               

               
               aor (0.195274)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               cbl (0.114797)

	27-647, gnl\|bosTau2\|chr3 (75765966-75766570)
	27-647, gnl\|Hg17\|chr1 (37671809-37671232)
	27-647, gnl\|Mm7\|chr4 (124518141-124518686)

	fbs (0.350693)
	vin (0.332557)
	mas (0.210305)
	aor (0.195274)
	nco (0.161734)
	pla (0.133672)
	cbl (0.114797)